Usage

In your virtual env:

$ pip install -r requirements.txt
$ python main.py

main.py does pairwise sequence alignment

main-msa.py does multiple sequence alignement with profiles (PSSM)

main-gor does secondary structure prediction

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
data		data
.gitignore		.gitignore
.projectile		.projectile
README.md		README.md
backtrack_matrix.py		backtrack_matrix.py
backtrack_matrix_msa.py		backtrack_matrix_msa.py
glob_opts.py		glob_opts.py
gor.py		gor.py
main-gor.py		main-gor.py
main-msa.py		main-msa.py
main.py		main.py
nw.py		nw.py
pssm.py		pssm.py
requirements.txt		requirements.txt
score.py		score.py
sequence.py		sequence.py
sequence_struct.py		sequence_struct.py
sw.py		sw.py
sw_msa.py		sw_msa.py
util.py		util.py

carlosgeos/protalign