This repository contains published biomedical image analysis models. Researchers are invited to contribute their extended version of our dataset via pull requests.
Dataset can be found under:
https://github.com/casus/bim/blob/main/data/model_list.csv
Medical Imaging Modality - MRI, computed tomography (CT), XRay, Microscopy, Optical coherence tomography (OCT), Digital Pathology or other
Biomed Task - COVID-19, Breast cancer, Small cell carcinoma, Cell Nuclei Segmentation
ML Task - ML Task, for example Segmentation, classification, regression
Reference - Reference using APA style, for example: Schmidt, U., Weigert, M., Broaddus, C., & Myers, G. (2018, September). Cell detection with star-convex polygons. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 265-273). Springer, Cham.
License - Open Source License, for example MIT, GPLv3 etc.
Performance - Performance value reached by the model on the task, for example accuracy or Dice score, Dice similarity coefficient (DSC), Average Precision (AP), Intersection over Union(IoU), Depth of field (DOF), Area under curve (AUC)
Link to model - Link to model download Link to dataset - Link to dataset download
Supervised - Supervised/Unsupervised
Parameters download - Are model parameters available for download and tansfer learning (yes/no)
Comment - Bullet-point style comment about the paper, this will be used in the paper
* in case values are not availabile write N/A