undocumented beta release tested with beta tests

cbcrg · Apr 26, 2021 · 0c265b2 · 0c265b2
1 parent eae37da
commit 0c265b2
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Showing 12 changed files with 23 additions and 15 deletions.
diff --git a/binaries/macosx/t_coffee b/binaries/macosx/t_coffee
diff --git a/build/web-readme.txt b/build/web-readme.txt
@@ -1,6 +1,6 @@
 T-Coffee distribution 
 =====================
-Version_13.45.35.45d0028 #_#UPDATE_VERSION -- Populated by edit_version.pl
+Version_13.45.36.eae37da #_#UPDATE_VERSION -- Populated by edit_version.pl
 The version ID is organized as follows: <Major Release>.<Latest Stable>.<Latest Beta>.<Github version tag>
 Content of this directory: 
 Linux Installation:

diff --git a/docs/.html/.buildinfo b/docs/.html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 3e8bf539849c33126542b5b223941c5b
+config: 06ee2d6d2b246f3d27c709dd89fc7c1d
 tags: 33eac41acc08762151beb8f3b7b86c8f
diff --git a/docs/.html/.doctrees/environment.pickle b/docs/.html/.doctrees/environment.pickle
diff --git a/docs/.html/_static/documentation_options.js b/docs/.html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: 'Version_13.45.35.45d0028',
+    VERSION: 'Version_13.45.36.eae37da',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/.html/index.html b/docs/.html/index.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>T-Coffee Version_13.45.35.45d0028 documentation</title>
+  <title>T-Coffee Version_13.45.36.eae37da documentation</title>
 
 
 
@@ -58,7 +58,7 @@
 
 
               <div class="version">
-                Version_13.45.35.45d0028
+                Version_13.45.36.eae37da
               </div>
 
 
@@ -716,7 +716,7 @@
 
       <li><a href="index.html#document-index">Docs</a> &raquo;</li>
 
-      <li>T-Coffee Version_13.45.35.45d0028 documentation</li>
+      <li>T-Coffee Version_13.45.36.eae37da documentation</li>
 
 
       <li class="wy-breadcrumbs-aside">

diff --git a/docs/.html/objects.inv b/docs/.html/objects.inv
diff --git a/docs/conf.py b/docs/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'Version_13.45.35.45d0028' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
+version = u'Version_13.45.36.eae37da' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
 # The full version, including alpha/beta/rc tags.
-release = u'Version_13.45.35.45d0028' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
+release = u'Version_13.45.36.eae37da' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/lib/dp_lib/phylo3d.c b/lib/dp_lib/phylo3d.c
@@ -354,16 +354,24 @@ int **col2bsrep2 (int **colin,int **colout, int ni)
   if (!l1)
     {
       //estimate the max #columns
-      l1=(int*)vcalloc (ni, sizeof (int));
-      ls=(int*)vcalloc (ni, sizeof (int));
+
+      int mni=0;//index of the right-most column
+
+      for (mni=0,i=0; i<ni; i++)
+	{
+	  if (colin[i][0]>mni)mni=colin[i][0];
+	  if (colin[i][1]>mni)mni=colin[i][1];
+	}
+      l1=(int*)vcalloc (mni+1, sizeof (int));
+      ls=(int*)vcalloc (mni+1, sizeof (int));
       for (i=0; i<ni; i++)
 	{
 	  l1[colin[i][0]]=1;
 	  l1[colin[i][1]]=1;
 	}
-      for (ns=0,i=0; i<=ni; i++)if (l1[i])ls[ns++]=i;
+      for (ns=0,i=0; i<=mni; i++)if (l1[i])ls[ns++]=i;
 
-      pairs=declare_int (ls[ns-1]+1,ls[ns-1]+1);
+      pairs=declare_int (mni+1,mni+1);
       for (i=0; i<ni; i++)
 	{
 	  int p1=colin[i][0];

diff --git a/lib/version/build_version.version b/lib/version/build_version.version
@@ -1 +1 @@
-35
+36
diff --git a/lib/version/github.version b/lib/version/github.version
@@ -1 +1 @@
-* master 45d0028 [ahead 3] Merge branch 'master' of https://github.com/cbcrg/tcoffee
+* master eae37da undocumented beta release tested with beta tests
diff --git a/lib/version/version_number.version b/lib/version/version_number.version
@@ -1 +1 @@
-Version_13.45.35.45d0028
+Version_13.45.36.eae37da