undocumented beta release tested with beta tests

cbcrg · Dec 10, 2021 · 844f401 · 844f401
1 parent 882a5bc
commit 844f401
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Showing 28 changed files with 15 additions and 17 deletions.
diff --git a/binaries/macosx/t_coffee b/binaries/macosx/t_coffee
diff --git a/build/web-readme.txt b/build/web-readme.txt
@@ -1,6 +1,6 @@
 T-Coffee distribution 
 =====================
-Version_13.45.55.0d8578a #_#UPDATE_VERSION -- Populated by edit_version.pl
+Version_13.45.56.882a5bc #_#UPDATE_VERSION -- Populated by edit_version.pl
 The version ID is organized as follows: <Major Release>.<Latest Stable>.<Latest Beta>.<Github version tag>
 Content of this directory: 
 Linux Installation:

diff --git a/docs/.html/.buildinfo b/docs/.html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 2935e0c225ef02fc3d158cc7d95bb795
+config: c6fa27ae24715af6be2b13f22b0da689
 tags: 33eac41acc08762151beb8f3b7b86c8f
diff --git a/docs/.html/.doctrees/doc2test.doctree b/docs/.html/.doctrees/doc2test.doctree
diff --git a/docs/.html/.doctrees/environment.pickle b/docs/.html/.doctrees/environment.pickle
diff --git a/docs/.html/.doctrees/index.doctree b/docs/.html/.doctrees/index.doctree
diff --git a/docs/.html/.doctrees/page-example.doctree b/docs/.html/.doctrees/page-example.doctree
diff --git a/docs/.html/.doctrees/tcoffee_citations_references.doctree b/docs/.html/.doctrees/tcoffee_citations_references.doctree
diff --git a/docs/.html/.doctrees/tcoffee_contacts_adresses.doctree b/docs/.html/.doctrees/tcoffee_contacts_adresses.doctree
diff --git a/docs/.html/.doctrees/tcoffee_faq.doctree b/docs/.html/.doctrees/tcoffee_faq.doctree
diff --git a/docs/.html/.doctrees/tcoffee_installation.doctree b/docs/.html/.doctrees/tcoffee_installation.doctree
diff --git a/docs/.html/.doctrees/tcoffee_license.doctree b/docs/.html/.doctrees/tcoffee_license.doctree
diff --git a/docs/.html/.doctrees/tcoffee_main_documentation.doctree b/docs/.html/.doctrees/tcoffee_main_documentation.doctree
diff --git a/docs/.html/.doctrees/tcoffee_quickstart.doctree b/docs/.html/.doctrees/tcoffee_quickstart.doctree
diff --git a/docs/.html/.doctrees/tcoffee_quickstart_regressive.doctree b/docs/.html/.doctrees/tcoffee_quickstart_regressive.doctree
diff --git a/docs/.html/.doctrees/tcoffee_release_guide.doctree b/docs/.html/.doctrees/tcoffee_release_guide.doctree
diff --git a/docs/.html/.doctrees/tcoffee_release_notes.doctree b/docs/.html/.doctrees/tcoffee_release_notes.doctree
diff --git a/docs/.html/.doctrees/tcoffee_technical_documentation.doctree b/docs/.html/.doctrees/tcoffee_technical_documentation.doctree
diff --git a/docs/.html/.doctrees/tcoffee_tutorials.doctree b/docs/.html/.doctrees/tcoffee_tutorials.doctree
diff --git a/docs/.html/.doctrees/tcoffee_webserver.doctree b/docs/.html/.doctrees/tcoffee_webserver.doctree
diff --git a/docs/.html/_static/documentation_options.js b/docs/.html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: 'Version_13.45.55.0d8578a',
+    VERSION: 'Version_13.45.56.882a5bc',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'singlehtml',

diff --git a/docs/.html/index.html b/docs/.html/index.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>T-Coffee Version_13.45.55.0d8578a documentation</title>
+  <title>T-Coffee Version_13.45.56.882a5bc documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -28,7 +28,7 @@
             <a href="#" class="icon icon-home"> T-Coffee
           </a>
               <div class="version">
-                Version_13.45.55.0d8578a
+                Version_13.45.56.882a5bc
               </div>
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
@@ -61,7 +61,7 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="#" class="icon icon-home"></a> &raquo;</li>
-      <li>T-Coffee Version_13.45.55.0d8578a documentation</li>
+      <li>T-Coffee Version_13.45.56.882a5bc documentation</li>
       <li class="wy-breadcrumbs-aside">
       </li>
   </ul>

diff --git a/docs/.html/objects.inv b/docs/.html/objects.inv
diff --git a/docs/conf.py b/docs/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'Version_13.45.55.0d8578a' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
+version = u'Version_13.45.56.882a5bc' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
 # The full version, including alpha/beta/rc tags.
-release = u'Version_13.45.55.0d8578a' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
+release = u'Version_13.45.56.882a5bc' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/lib/version/build_version.version b/lib/version/build_version.version
@@ -1 +1 @@
-55
+56
diff --git a/lib/version/github.version b/lib/version/github.version
@@ -1 +1 @@
-* master 0d8578a undocumented beta release tested with beta tests
+* master 882a5bc undocumented beta release tested with beta tests
diff --git a/lib/version/version_number.version b/lib/version/version_number.version
@@ -1 +1 @@
-Version_13.45.55.0d8578a
+Version_13.45.56.882a5bc
diff --git a/t_coffee/src/makefile b/t_coffee/src/makefile
@@ -26,8 +26,6 @@ m='undocumented beta release tested with $(type) tests'
 #
 ifndef HOME2
 HOME2=$(HOME)/Dropbox
-#SRC_DIR=$(HOME2)/projects/git/tcoffee/t_coffee/src
-SRC_DIR=./
 endif
 #### These paths related to the publishing on the production machine: they can stay relative
 WEB_DIR=$(HOME2)/dropBoxShared/Work/tcoffee.org/public_html/
@@ -58,22 +56,22 @@ endif
 
 ##### These paths must be defined relatively to the src directory
 ifndef LIB_DIR
-#LIB_DIR=/Users/cnotredame_1/Dropbox/projects/git/tcoffee/lib/
-LIB_DIR=$(SRC_DIR)/../../lib
+#LIB_DIR=/Users/cnotredame/Dropbox/projects/git/tcoffee/lib/
+LIB_DIR=$(CURDIR)/../../lib
 endif
 
 
 
 ifndef GIT_DIR
-GIT_DIR=$(SRC_DIR)/../../
+GIT_DIR=$(CURDIR)/../../
 endif
 
 ifndef GIT_BIN
 GIT_BIN=$(GIT_DIR)/binaries
 endif
 
 ifndef EXECUTABLE_DIR
-EXECUTABLE_DIR=$(SRC_DIR)
+EXECUTABLE_DIR=$(CURDIR)
 endif
 
 ifndef RST_DOC