undocumented beta release tested with beta tests

cbcrg · Dec 1, 2020 · 96a2885 · 96a2885
1 parent 2649ebf
commit 96a2885
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Showing 12 changed files with 23 additions and 13 deletions.
diff --git a/binaries/macosx/t_coffee b/binaries/macosx/t_coffee
diff --git a/build/web-readme.txt b/build/web-readme.txt
@@ -1,6 +1,6 @@
 T-Coffee distribution 
 =====================
-Version_13.45.26.0d07ef6 #_#UPDATE_VERSION -- Populated by edit_version.pl
+Version_13.45.27.2649ebf #_#UPDATE_VERSION -- Populated by edit_version.pl
 The version ID is organized as follows: <Major Release>.<Latest Stable>.<Latest Beta>.<Github version tag>
 Content of this directory: 
 Linux Installation:

diff --git a/docs/.html/.buildinfo b/docs/.html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 13b7b46f06e22259ae5fb374cfaa8ad6
+config: 8b0f3a1086ba39bf510b865ae969158c
 tags: 33eac41acc08762151beb8f3b7b86c8f
diff --git a/docs/.html/.doctrees/environment.pickle b/docs/.html/.doctrees/environment.pickle
diff --git a/docs/.html/_static/documentation_options.js b/docs/.html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: 'Version_13.45.26.0d07ef6',
+    VERSION: 'Version_13.45.27.2649ebf',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/.html/index.html b/docs/.html/index.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>T-Coffee Version_13.45.26.0d07ef6 documentation</title>
+  <title>T-Coffee Version_13.45.27.2649ebf documentation</title>
 
 
 
@@ -58,7 +58,7 @@
 
 
               <div class="version">
-                Version_13.45.26.0d07ef6
+                Version_13.45.27.2649ebf
               </div>
 
 
@@ -716,7 +716,7 @@
 
       <li><a href="index.html#document-index">Docs</a> &raquo;</li>
 
-      <li>T-Coffee Version_13.45.26.0d07ef6 documentation</li>
+      <li>T-Coffee Version_13.45.27.2649ebf documentation</li>
 
 
       <li class="wy-breadcrumbs-aside">

diff --git a/docs/.html/objects.inv b/docs/.html/objects.inv
diff --git a/docs/conf.py b/docs/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'Version_13.45.26.0d07ef6' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
+version = u'Version_13.45.27.2649ebf' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
 # The full version, including alpha/beta/rc tags.
-release = u'Version_13.45.26.0d07ef6' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
+release = u'Version_13.45.27.2649ebf' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/lib/dp_lib/util_dp_drivers.c b/lib/dp_lib/util_dp_drivers.c
@@ -2812,6 +2812,7 @@ Alignment * align_two_structures ( Sequence *S, int s1, int s2, char *mode)
 {
   static char *in=vtmpnam (NULL);
   static char *out=vtmpnam (NULL);
+  static char *command=NULL;
   FILE *fp;
 
   fp=vfopen (in, "w");
@@ -2822,8 +2823,17 @@ Alignment * align_two_structures ( Sequence *S, int s1, int s2, char *mode)
   vfclose (fp);
 
 
-  if (verbose()==2)printf_system ("t_coffee -in %s -template_file %s -method %s -outfile=%s -output fasta_aln",in,in,mode, out);
-  else printf_system             ("t_coffee -in %s -template_file %s -method %s -outfile=%s -output fasta_aln -quiet >/dev/null 2>/dev/null",in,in,mode, out);
+
+  if (verbose()==2)command=csprintf (command,"t_coffee -in %s -template_file %s -method %s -outfile=%s -output fasta_aln",in,in,mode, out);
+  else command=csprintf (command,"t_coffee -in %s -template_file %s -method %s -outfile=%s -output fasta_aln -quiet >/dev/null 2>/dev/null",in,in,mode, out);
+  system (command);
+
+  if (!check_file_exists (out))
+    {
+      command=csprintf (command,"t_coffee -in %s -template_file %s -method %s -outfile=%s -output fasta_aln",in,in,mode, out);
+      system (command);
+      printf_exit ( EXIT_FAILURE, stderr, "\nCould not align %s and %s with %s [FATAL:%s]",S->name[s1],S->name[s2],mode,PROGRAM);
+    }
   return quick_read_fasta_aln (NULL,out);
 }
 

diff --git a/lib/version/build_version.version b/lib/version/build_version.version
@@ -1 +1 @@
-26
+27
diff --git a/lib/version/github.version b/lib/version/github.version
@@ -1 +1 @@
-* master 0d07ef6 undocumented beta release tested with beta tests
+* master 2649ebf undocumented beta release tested with beta tests
diff --git a/lib/version/version_number.version b/lib/version/version_number.version
@@ -1 +1 @@
-Version_13.45.26.0d07ef6
+Version_13.45.27.2649ebf