undocumented beta release tested with beta tests

cbcrg · Oct 18, 2020 · c3b4b29 · c3b4b29
1 parent f9661f5
commit c3b4b29
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Showing 17 changed files with 17 additions and 13 deletions.
diff --git a/binaries/macosx/t_coffee b/binaries/macosx/t_coffee
diff --git a/build/web-readme.txt b/build/web-readme.txt
@@ -1,6 +1,6 @@
 T-Coffee distribution 
 =====================
-Version_13.45.2.0818d8a #_#UPDATE_VERSION -- Populated by edit_version.pl
+Version_13.45.3.f9661f5 #_#UPDATE_VERSION -- Populated by edit_version.pl
 The version ID is organized as follows: <Major Release>.<Latest Stable>.<Latest Beta>.<Github version tag>
 Content of this directory: 
 Linux Installation:

diff --git a/docs/.html/.buildinfo b/docs/.html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ee64ff0480d652ce9cafff68978abb35
+config: a6b57a8c372452bf173b5ec65b296940
 tags: 33eac41acc08762151beb8f3b7b86c8f
diff --git a/docs/.html/.doctrees/environment.pickle b/docs/.html/.doctrees/environment.pickle
diff --git a/docs/.html/_static/documentation_options.js b/docs/.html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: 'Version_13.45.2.0818d8a',
+    VERSION: 'Version_13.45.3.f9661f5',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/.html/index.html b/docs/.html/index.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>T-Coffee Version_13.45.2.0818d8a documentation</title>
+  <title>T-Coffee Version_13.45.3.f9661f5 documentation</title>
 
 
 
@@ -58,7 +58,7 @@
 
 
               <div class="version">
-                Version_13.45.2.0818d8a
+                Version_13.45.3.f9661f5
               </div>
 
 
@@ -716,7 +716,7 @@
 
       <li><a href="index.html#document-index">Docs</a> &raquo;</li>
 
-      <li>T-Coffee Version_13.45.2.0818d8a documentation</li>
+      <li>T-Coffee Version_13.45.3.f9661f5 documentation</li>
 
 
       <li class="wy-breadcrumbs-aside">

diff --git a/docs/.html/objects.inv b/docs/.html/objects.inv
diff --git a/docs/conf.py b/docs/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'Version_13.45.2.0818d8a' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
+version = u'Version_13.45.3.f9661f5' #_#UPDATE_VERSION_TAG1 -- Populated by edit_version.pl
 # The full version, including alpha/beta/rc tags.
-release = u'Version_13.45.2.0818d8a' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
+release = u'Version_13.45.3.f9661f5' #_#UPDATE_VERSION_TAG2 -- Populated by edit_version.pl
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/lib/dp_lib/evaluate.c b/lib/dp_lib/evaluate.c
@@ -1787,6 +1787,7 @@ float tune_imaxD (Alignment *A, Constraint_list *CL, char *mode, float scan3D_ma
   return bimaxD;
 }
 
+
 
 
 

diff --git a/lib/dp_lib/evaluate_for_struc.c b/lib/dp_lib/evaluate_for_struc.c
@@ -78,6 +78,7 @@ char * pdb2contacts2lib (Sequence *S, char *mode,float max, char *name, char * i
   else scope=all;
 
 
+
 
   if (!max)
     {

diff --git a/lib/io_lib/tree_util.c b/lib/io_lib/tree_util.c
@@ -1872,6 +1872,7 @@ NT_node compute_std_tree_2 (Alignment *A, int **s, char *cl)
       return compute_cw_tree (A);
     }
 
+
   //compute distance matrix if needed
   if ( !s)
     {

diff --git a/lib/util_lib/reformat.c b/lib/util_lib/reformat.c
@@ -387,6 +387,7 @@ int seq_reformat ( int argc, char **in_argv)
 		fprintf ( stdout, "\n     .....................gop and gep must be negative");
 		fprintf ( stdout, "\n     .....................use -output=color_ascii, color_html to get a color display");
 
+
 		fprintf ( stdout, "\n.....+evaluate_lat........Make a lateral evaluation with matrix");
 		fprintf ( stdout, "\n     +msa_weight proc.....Computes weights using the procedure");
 		fprintf ( stdout, "\nRNA analysis Post Processing___________________________________________________");

diff --git a/lib/util_lib/util.c b/lib/util_lib/util.c
@@ -6593,7 +6593,7 @@ void dump_io(char *target, char *nature)
 	  n++;
 	}
 
-      free_arrayN ((void ***)list, 3);
+      free_arrayN ((void ***)list, 3); 
 
       fprintf (fp, "<environement>\n");
       fclose (fp);

diff --git a/lib/util_lib/util_make_tree.c b/lib/util_lib/util_make_tree.c
@@ -2648,7 +2648,7 @@ NT_node list2balanced_dnd (char **name, int n)
       i=j=0;
       for (j=i=0; i<n-1; i+=2)
 	{
-	  node=new_declare_tree_node();
+	  node=new_declare_tree_node(); 
 	  node->left=NL[i];
 	  node->right=NL[i+1];
 	  (node->right)->parent=(node->left)->parent=node;

diff --git a/lib/version/build_version.version b/lib/version/build_version.version
@@ -1 +1 @@
-2
+3
diff --git a/lib/version/github.version b/lib/version/github.version
@@ -1 +1 @@
-* master 0818d8a undocumented beta release tested with stable tests
+* master f9661f5 [ahead 2] Merge branch 'master' of https://github.com/cbcrg/tcoffee
diff --git a/lib/version/version_number.version b/lib/version/version_number.version
@@ -1 +1 @@
-Version_13.45.2.0818d8a
+Version_13.45.3.f9661f5