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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 129 45

Repositories

Showing 10 of 96 repositories
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 129 Apache-2.0 45 31 (3 issues need help) 5 Updated Sep 26, 2024
  • MARCS Public
    cbg-ethz/MARCS’s past year of commit activity
    R 0 0 0 0 Updated Sep 26, 2024
  • SARS-CoV-2-wastewater-sample-processing-VILOCA Public

    wastewater-sample-processing-VILOCA

    cbg-ethz/SARS-CoV-2-wastewater-sample-processing-VILOCA’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 1 0 0 Updated Sep 25, 2024
  • Jnotype Public

    Exploratory analysis of binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 2 MIT 0 6 2 Updated Sep 24, 2024
  • LongSom Public

    LongSom tool for long-reads

    cbg-ethz/LongSom’s past year of commit activity
    Python 5 0 2 0 Updated Sep 21, 2024
  • COMPASS Public
    cbg-ethz/COMPASS’s past year of commit activity
    C++ 18 GPL-3.0 10 5 0 Updated Sep 11, 2024
  • cowwid Public

    Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

    cbg-ethz/cowwid’s past year of commit activity
    Jupyter Notebook 7 0 1 0 Updated Sep 9, 2024
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 14 GPL-3.0 0 0 0 Updated Sep 6, 2024
  • smallgenomeutilities Public

    smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

    cbg-ethz/smallgenomeutilities’s past year of commit activity
    Python 10 GPL-2.0 7 4 2 Updated Sep 3, 2024
  • scDEF Public

    Deep exponential families for single-cell data.

    cbg-ethz/scDEF’s past year of commit activity
    Python 20 1 0 0 Updated Sep 3, 2024
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