update readme #642

	name: Publish Website

	on:
	push:
	pull_request:

	jobs:
	build_n_push:
	runs-on: ubuntu-latest

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- uses: actions/checkout@v2

	- uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: "3.10"
	mamba-version: "*"
	channels: conda-forge,bioconda,defaults
	channel-priority: strict
	activate-environment: V-pipe
	auto-update-conda: true

	- name: Install dependencies
	run: \|
	mamba install --yes snakemake-minimal jupytext sra-tools nbconvert ipykernel
	python -m ipykernel install --user

	- name: Build website
	working-directory: ./docs
	run: ./convert.sh branch

	- uses: actions/upload-artifact@v2
	with:
	name: JupyterNotebooks
	path: ./docs/*.ipynb
	# - name: Publish
	# uses: peaceiris/actions-gh-pages@v3
	# with:
	# github_token: ${{ secrets.GITHUB_TOKEN }}
	# publish_dir: ./docs

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