[indels] update method run file with threads and without haplo files #934
LaraFuhrmannrun_regression_tests.yaml
on: push
static_tests
28m 14s
cancel-previous-jobs
8s
Matrix: runtime_tests
Annotations
1 error and 5 warnings
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static_tests
The process '/usr/share/miniconda/condabin/mamba' failed with exit code 1
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cancel-previous-jobs
The following actions uses node12 which is deprecated and will be forced to run on node16: styfle/cancel-workflow-action@0.9.1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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static_tests
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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static_tests
Mamba support is still experimental and can result in differently solved environments!
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static_tests
argument COMMAND: conflicting subparser: repoquery
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static_tests
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/usr/share/miniconda/lib/python3.11/site-packages/conda/exception_handler.py", line 17, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/mamba/mamba.py", line 945, in exception_converter
raise e
File "/usr/share/miniconda/lib/python3.11/site-packages/mamba/mamba.py", line 938, in exception_converter
exit_code = _wrapped_main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/site-packages/mamba/mamba.py", line 877, in _wrapped_main
configure_parser_repoquery(p._subparsers._group_actions[0])
File "/usr/share/miniconda/lib/python3.11/site-packages/mamba/mamba.py", line 805, in configure_parser_repoquery
p = sub_parsers.add_parser(
^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda/lib/python3.11/argparse.py", line 1192, in add_parser
raise ArgumentError(self, _('conflicting subparser: %s') % name)
argparse.ArgumentError: argument COMMAND: conflicting subparser: repoquery
`$ /usr/share/miniconda/condabin/mamba create --name V-pipe python=3.10`
environment variables:
CIO_TEST=<not set>
CONDA=/usr/share/miniconda
CONDA_PKGS_DIR=/home/runner/conda_pkgs_dir
CONDA_ROOT=/usr/share/miniconda
CURL_CA_BUNDLE=<not set>
DEPLOYMENT_BASEPATH=/opt/runner
GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json
GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_450b3eba-10c7-
4653-8979-dee3a485e4f8
LD_PRELOAD=<not set>
PATH=/usr/share/miniconda/condabin:/home/runner/.local/bin:/opt/pipx_bin:/h
ome/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/lo
cal/.ghcup/bin:/home/runner/.dotnet/tools:/snap/bin:/usr/local/sbin:/u
sr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SELENIUM_JAR_PATH=/usr/share/java/selenium-server.jar
SSL_CERT_FILE=<not set>
SWIFT_PATH=/usr/share/swift/usr/bin
active environment : None
user config file : /home/runner/.condarc
populated config files :
conda version : 23.7.4
conda-build version : not installed
python version : 3.11.6.final.0
virtual packages : __archspec=1=x86_64
__glibc=2.35=0
__linux=6.2.0=0
__unix=0=0
base environment : /usr/share/miniconda (writable)
conda av data dir : /usr/share/miniconda/etc/conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /usr/share/miniconda/pkgs
/home/runner/.conda/pkgs
envs directories : /usr/share/miniconda/envs
/home/runner/.conda/envs
platform : linux-64
user-agent : conda/23.7.4 requests/2.31.0 CPython/3.11.6 Linux/6.2.0-1012-azure ubuntu/22.04.3 glibc/2.35
UID:GID : 1001:127
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
If you suspect this error is being caused by a malfunctioning plugin,
consider using the --no-plugins option to turn off plugins.
Example: conda --no-plugins install <package>
Alternatively, you can set the CONDA_NO_PLUGINS environment variable on
the command line to run the command without pl
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