included lofreq in master snake file

cbg-ethz · May 11, 2023 · 46beff4 · 46beff4
1 parent 8c45995
commit 46beff4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -48,7 +48,7 @@ if config.output["trim_primers"]:
     include: "rules/primerstrim.smk"
 
 
-if config.output["snv"] or config.output["local"]:
+if config.output["snv"] or config.output["local"] or config.output["lofreq"]:
 
     include: "rules/snv.smk"