change default viloca mode

cbg-ethz · Jun 6, 2024 · 005909b · 005909b
1 parent 98438cb
commit 005909b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/tests/data_1/shotgun_test.sh b/tests/data_1/shotgun_test.sh
@@ -1,4 +1,4 @@
 #!/bin/bash
 
-viloca run -a 0.1 -w 201 -x 100000 -p 0.9 -c 0 \
+viloca run -a 0.1 -w 201 --mode shorah -x 100000 -p 0.9 -c 0 \
 -r HXB2:2469-3713 -R 42 -f test_ref.fasta -b test_aln.cram --out_format csv "$@"