update refseq and genbank files

cdanielmachado · Nov 9, 2017 · 86e1ef8 · 86e1ef8
1 parent 8461af1
commit 86e1ef8
Show file tree

Hide file tree

Showing 6 changed files with 4 additions and 4 deletions.
diff --git a/carveme/config.cfg b/carveme/config.cfg
@@ -9,8 +9,8 @@ unbalanced_metabolites = data/input/unbalanced_metabolites.csv
 manually_curated = data/input/manually_curated.csv
 
 [ncbi]
-refseq = data/input/refseq_assembly_all.tsv.gz
-genbank = data/input/genbank_assembly_all.tsv.gz
+refseq = data/input/refseq_release_84.tsv.gz
+genbank = data/input/genbank_release_221.tsv.gz
 
 [generated]
 folder = data/generated/

diff --git a/carveme/data/input/genbank_assembly_all.tsv.gz b/carveme/data/input/genbank_assembly_all.tsv.gz
diff --git a/carveme/data/input/genbank_release_221.tsv.gz b/carveme/data/input/genbank_release_221.tsv.gz
diff --git a/carveme/data/input/refseq_assembly_all.tsv.gz b/carveme/data/input/refseq_assembly_all.tsv.gz
diff --git a/carveme/data/input/refseq_release_84.tsv.gz b/carveme/data/input/refseq_release_84.tsv.gz
diff --git a/scripts/carveme_init b/scripts/carveme_init
@@ -15,8 +15,8 @@ if __name__ == '__main__':
     downloads = [
         'data/input/bigg_proteins.faa',
         'data/input/equilibrator_compounds.tsv.gz',
-        'data/input/refseq_assembly_all.tsv.gz',
-        'data/input/genbank_assembly_all.tsv.gz',
+        'data/input/refseq_release_84.tsv.gz',
+        'data/input/genbank_release_221.tsv.gz',
         'data/generated/bigg_gprs.csv.gz',
         'data/generated/model_specific_data.csv.gz',
         'data/generated/universe_draft.xml.gz',