Don't configure aromaticity if not explicitly set to true for the ato…

…m type (closes #1322)
cdk · Aug 10, 2016 · 0dda78a · 0dda78a
1 parent d4b2490
commit 0dda78a
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/base/standard/src/main/java/org/openscience/cdk/tools/manipulator/AtomTypeManipulator.java b/base/standard/src/main/java/org/openscience/cdk/tools/manipulator/AtomTypeManipulator.java
@@ -82,7 +82,8 @@ public static void configure(IAtom atom, IAtomType atomType) {
             if (constant != null) {
                 atom.setProperty(CDKConstants.CHEMICAL_GROUP_CONSTANT, constant);
             }
-            atom.setFlag(CDKConstants.ISAROMATIC, atomType.getFlag(CDKConstants.ISAROMATIC));
+            if (atomType.getFlag(CDKConstants.ISAROMATIC))
+                atom.setFlag(CDKConstants.ISAROMATIC, atomType.getFlag(CDKConstants.ISAROMATIC));
 
             Object color = atomType.getProperty("org.openscience.cdk.renderer.color");
             if (color != null) {