Update tests to account for stable release not having embeddings (#1226)

chanzuckerberg · Jul 8, 2024 · 82a3f86 · 82a3f86
1 parent af88f3d
commit 82a3f86
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Showing 3 changed files with 5 additions and 11 deletions.
diff --git a/api/python/cellxgene_census/tests/conftest.py b/api/python/cellxgene_census/tests/conftest.py
@@ -67,4 +67,4 @@ def census() -> soma.Collection:
 def lts_census() -> soma.Collection:
     import cellxgene_census
 
-    return cellxgene_census.open_soma(census_version="stable")
+    return cellxgene_census.open_soma(census_version="2023-12-15")
diff --git a/api/python/cellxgene_census/tests/experimental/test_embeddings.py b/api/python/cellxgene_census/tests/experimental/test_embeddings.py
@@ -77,6 +77,10 @@ def test_get_embedding_metadata_by_name(requests_mock: rm.Mocker) -> None:
         )
 
 
+@pytest.mark.xfail(
+    strict=True,
+    reason="Current stable release doesn't have embeddings available. This xfail should be removed once that's resolved.",
+)
 def test_get_embedding_by_name_w_version_aliases() -> None:
     """https://github.com/chanzuckerberg/cellxgene-census/issues/1202"""
     # Only testing "stable" as "latest" doesn't have embeddings

diff --git a/api/python/cellxgene_census/tests/test_get_anndata.py b/api/python/cellxgene_census/tests/test_get_anndata.py
@@ -8,16 +8,6 @@
 import cellxgene_census
 
 
-@pytest.fixture(scope="session")
-def census() -> soma.Collection:
-    return cellxgene_census.open_soma(census_version="latest")
-
-
-@pytest.fixture(scope="session")
-def lts_census() -> soma.Collection:
-    return cellxgene_census.open_soma(census_version="stable")
-
-
 @pytest.mark.live_corpus
 def test_get_anndata_value_filter(census: soma.Collection) -> None:
     ad = cellxgene_census.get_anndata(