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Make prototype of Census builder with support of Spatial data #1127

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pablo-gar opened this issue May 6, 2024 · 0 comments
Open

Make prototype of Census builder with support of Spatial data #1127

pablo-gar opened this issue May 6, 2024 · 0 comments
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census builder Related to the census builder tool P0 Priority 0 - Critical, fix ASAP!

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@pablo-gar
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pablo-gar commented May 6, 2024

Scope

The prototype builder should be able to:

  1. Take the input example data (see below)
  2. Wrangle each component into the correct objects and structure according to the draft Census schema.
  3. Output a test spatial Census build.

Relevant information

Input example data

The h5ads described in this document.

Census Visium spatial test datasets

@prathapsridharan familiarity with the CELLxGENE Dataset schema 5.1.0 is necessary.

Census spatial schema

Please top-comment in this ticket for the schema text. See last comment for an schematic of the latest iteration of the schema.

TileDB-SOMA implementation

Please become familiar with the Spatial proposal: Proposed SOMA Spatial Support

To implement the Census schema in the builder please use the branch spatial from somacore.

@pablo-gar pablo-gar transferred this issue from chanzuckerberg/single-cell May 6, 2024
@pablo-gar pablo-gar added census builder Related to the census builder tool P0 Priority 0 - Critical, fix ASAP! labels May 8, 2024
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census builder Related to the census builder tool P0 Priority 0 - Critical, fix ASAP!
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