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@chasewnelson

Chase W. Nelson 倪誠志

Research Fellow at NCI-NIH • Visiting Scientist at AMNH • Bioinformatics, cancer, molecular evolution, overlapping genes, population genetics, viruses

Popular repositories

  1. SNPGenie SNPGenie Public

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    Perl 99 37

  2. Taiwan-COVID-19 Taiwan-COVID-19 Public

    Analysis and visualization of Taiwan’s COVID-19 data

    R 27 4

  3. OLGenie OLGenie Public

    Program for estimating dN/dS in overlapping genes (OLGs)

    Perl 12 2

  4. EBT EBT Public

    Evolutionary Bioinformatics Toolkit (EBT)

    Perl 10 4

  5. trevolver trevolver Public

    Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context

    Perl 9 1

  6. SARS-CoV-2-ORF3d SARS-CoV-2-ORF3d Public

    Supplementary scripts for Nelson et al. (2020) paper on ORF3d

    R 5 4

Repositories

Showing 9 of 9 repositories
  • Soni-response Public

    Scripts, analysis code, input data, and intermediate files for response to Soni et al.

    R 1 GPL-3.0 0 0 0 Updated Apr 20, 2024
  • Taiwan-COVID-19 Public

    Analysis and visualization of Taiwan’s COVID-19 data

    R 27 GPL-3.0 4 0 0 Updated Nov 24, 2023
  • SNPGenie Public

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    Perl 99 GPL-3.0 37 26 0 Updated Aug 21, 2023
  • OLGenie Public

    Program for estimating dN/dS in overlapping genes (OLGs)

    Perl 12 GPL-3.0 2 2 0 Updated Dec 2, 2022
  • HPV16-molecular-evolution Public

    Supplementary material for study of HPV16 molecular evolution

    Python 0 GPL-3.0 0 0 0 Updated Sep 13, 2022
  • VCFgenie Public

    Program for reproducibly filtering VCF files and eliminating false positive variants

    Python 0 GPL-3.0 0 0 0 Updated Aug 25, 2022
  • SARS-CoV-2-ORF3d Public

    Supplementary scripts for Nelson et al. (2020) paper on ORF3d

    R 5 GPL-3.0 4 0 0 Updated Nov 5, 2020
  • trevolver Public

    Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context

    Perl 9 GPL-3.0 1 0 0 Updated Sep 19, 2020
  • EBT Public

    Evolutionary Bioinformatics Toolkit (EBT)

    Perl 10 GPL-3.0 4 1 0 Updated Jul 14, 2020

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