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Merge pull request #65 from ayamada/feature/test-check-pileup-file
Issue #61 (2) Examine result files of `cljam pileup` in test
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| ref 7 T 1 . ~ | ||
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| ref 9 A 3 ... ~~~ | ||
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| ref 14 A 3 .+4AGAG.+2GG. ~~~ | ||
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| ref 18 A 3 .-1G.+2AA. ~~~ | ||
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| ref2 14 C 6 ...+4AAATTTT ?????? | ||
| ref2 15 A 6 ...... ?????? | ||
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| ref2 17 T 6 AA.... ?????? | ||
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| ref2 20 A 6 ...... ?????? | ||
| ref2 21 G 5 T.... ????? | ||
| ref2 22 T 5 ..... ????? | ||
| ref2 23 C 4 .... ???? | ||
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| ref2 27 A 4 .... ???? | ||
| ref2 28 G 3 ... ??? | ||
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| ref2 31 C 3 ... ??? | ||
| ref2 32 A 3 ... ??? | ||
| ref2 33 A 3 ... ??? | ||
| ref2 34 C 3 ... ??? | ||
| ref2 35 T 2 .. ?? | ||
| ref2 36 A 1 . ? |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,36 @@ | ||
| ref2 1 N 1 A ? | ||
| ref2 2 N 2 GG ?? | ||
| ref2 3 N 2 GG ?? | ||
| ref2 4 N 2 TT ?? | ||
| ref2 5 N 2 TT ?? | ||
| ref2 6 N 3 TTT ??? | ||
| ref2 7 N 3 TTT ??? | ||
| ref2 8 N 3 AAA ??? | ||
| ref2 9 N 3 TTT ??? | ||
| ref2 10 N 4 AAAC ???? | ||
| ref2 11 N 4 AAAA ???? | ||
| ref2 12 N 5 AAAAA ????? | ||
| ref2 13 N 5 AAAAA ????? | ||
| ref2 14 N 6 CCC+4AAATTTT ?????? | ||
| ref2 15 N 6 AAAAAA ?????? | ||
| ref2 16 N 6 AAAAAA ?????? | ||
| ref2 17 N 6 AATTTT ?????? | ||
| ref2 18 N 6 TTTTTT ?????? | ||
| ref2 19 N 6 AAAAAA ?????? | ||
| ref2 20 N 6 AAAAAA ?????? | ||
| ref2 21 N 5 TGGGG ????? | ||
| ref2 22 N 5 TTTTT ????? | ||
| ref2 23 N 4 CCCC ???? | ||
| ref2 24 N 4 TTTT ???? | ||
| ref2 25 N 4 AAAA ???? | ||
| ref2 26 N 4 CCCC ???? | ||
| ref2 27 N 4 AAAA ???? | ||
| ref2 28 N 3 GGG ??? | ||
| ref2 29 N 3 AAA ??? | ||
| ref2 30 N 3 GGG ??? | ||
| ref2 31 N 3 CCC ??? | ||
| ref2 32 N 3 AAA ??? | ||
| ref2 33 N 3 AAA ??? | ||
| ref2 34 N 3 CCC ??? | ||
| ref2 35 N 2 TT ?? | ||
| ref2 36 N 1 A ? |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,36 @@ | ||
| ref2 1 A 1 . ? | ||
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| ref2 14 C 6 ...+4AAATTTT ?????? | ||
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| ref2 35 T 2 .. ?? | ||
| ref2 36 A 1 . ? |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| ref2 10 N 4 AAAC ???? | ||
| ref2 11 N 4 AAAA ???? | ||
| ref2 12 N 5 AAAAA ????? | ||
| ref2 13 N 5 AAAAA ????? | ||
| ref2 14 N 6 CCC+4AAATTTT ?????? | ||
| ref2 15 N 6 AAAAAA ?????? | ||
| ref2 16 N 6 AAAAAA ?????? | ||
| ref2 17 N 6 AATTTT ?????? | ||
| ref2 18 N 6 TTTTTT ?????? | ||
| ref2 19 N 6 AAAAAA ?????? | ||
| ref2 20 N 6 AAAAAA ?????? | ||
| ref2 21 N 5 TGGGG ????? | ||
| ref2 22 N 5 TTTTT ????? | ||
| ref2 23 N 4 CCCC ???? | ||
| ref2 24 N 4 TTTT ???? | ||
| ref2 25 N 4 AAAA ???? | ||
| ref2 26 N 4 CCCC ???? | ||
| ref2 27 N 4 AAAA ???? | ||
| ref2 28 N 3 GGG ??? | ||
| ref2 29 N 3 AAA ??? | ||
| ref2 30 N 3 GGG ??? | ||
| ref2 31 N 3 CCC ??? | ||
| ref2 32 N 3 AAA ??? | ||
| ref2 33 N 3 AAA ??? | ||
| ref2 34 N 3 CCC ??? | ||
| ref2 35 N 2 TT ?? | ||
| ref2 36 N 1 A ? |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| ref2 10 A 4 ...C ???? | ||
| ref2 11 A 4 .... ???? | ||
| ref2 12 A 5 ..... ????? | ||
| ref2 13 A 5 ..... ????? | ||
| ref2 14 C 6 ...+4AAATTTT ?????? | ||
| ref2 15 A 6 ...... ?????? | ||
| ref2 16 A 6 ...... ?????? | ||
| ref2 17 T 6 AA.... ?????? | ||
| ref2 18 T 6 ...... ?????? | ||
| ref2 19 A 6 ...... ?????? | ||
| ref2 20 A 6 ...... ?????? | ||
| ref2 21 G 5 T.... ????? | ||
| ref2 22 T 5 ..... ????? | ||
| ref2 23 C 4 .... ???? | ||
| ref2 24 T 4 .... ???? | ||
| ref2 25 A 4 .... ???? | ||
| ref2 26 C 4 .... ???? | ||
| ref2 27 A 4 .... ???? | ||
| ref2 28 G 3 ... ??? | ||
| ref2 29 A 3 ... ??? | ||
| ref2 30 G 3 ... ??? | ||
| ref2 31 C 3 ... ??? | ||
| ref2 32 A 3 ... ??? | ||
| ref2 33 A 3 ... ??? | ||
| ref2 34 C 3 ... ??? | ||
| ref2 35 T 2 .. ?? | ||
| ref2 36 A 1 . ? |
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