Fixed error of always generating index file

churchill-lab · Jun 6, 2018 · 112be5e · 112be5e
1 parent 52cf234
commit 112be5e
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Showing 5 changed files with 9 additions and 4 deletions.
diff --git a/HISTORY.rst b/HISTORY.rst
@@ -3,6 +3,11 @@
 History
 -------
 
+0.2.5 (06/06/2018)
+~~~~~~~~~~~~~~~~~~
+
+* Fixed error of always generating index file
+
 0.2.4 (06/05/2018)
 ~~~~~~~~~~~~~~~~~~
 

diff --git a/g2gtools/__init__.py b/g2gtools/__init__.py
@@ -1,3 +1,3 @@
-__version__ = '0.2.4'
+__version__ = '0.2.5'
 __author__ = 'Matthew Vincent and Kwangbom \"KB\" Choi, The Jackson Laboratory'
 __email__ = 'matt.vincent@jax.org'
diff --git a/g2gtools/g2g_utils.py b/g2gtools/g2g_utils.py
@@ -335,7 +335,7 @@ def index_file(original_file, file_format="vcf", overwrite=False):
     :param file_format:
     :return:
     """
-    if not overwrite or not has_index_file(original_file, file_format=file_format):
+    if overwrite or not has_index_file(original_file, file_format=file_format):
         if file_format.lower() == 'fa':
             pysam.faidx(original_file)
         elif file_format.lower() == 'vcf':

diff --git a/setup.cfg b/setup.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.2.4
+current_version = 0.2.5
 commit = True
 tag = True
 

diff --git a/setup.py b/setup.py
@@ -30,7 +30,7 @@
 
 setup(
     name='g2gtools',
-    version='0.2.4',
+    version='0.2.5',
     description="A suite of tools for the reconstruction of personal diploid genomes and better coordinate conversion",
     long_description=readme + '\n\n' + history,
     author='Matthew J. Vincent and Kwangbom "KB" Choi, The Jackson Laboratory',