@churchill-lab

Churchill's Lab

Gary Churchill's Lab at The Jackson Laboratory

Pinned repositories

  1. g2gtools

    Custom genome creation and coordinate conversion

    Python 7 3

  2. alntools

    Preprocess bam file into a compressed alignment incidence matrix (equivalence class)

    Python 1

  3. kallisto-align

    Export kallisto pseudo-alignments in a sparse binary matrix format

    C++ 4 1

  4. emase-zero

    C++ Implementation of EMASE

    C++ 3 1

  5. emase

    Expectation-Maximization algorithm for Allele-Specific Expression

    Python 15 9

  6. gbrs

    Genotype-free genome reconstruction and ASE quantification

    Python 4 2

  • R 1 Updated Aug 10, 2018
  • HTML Updated Aug 10, 2018
  • C++ Implementation of EMASE

    C++ 3 1 GPL-3.0 Updated Aug 10, 2018
  • Preprocess bam file into a compressed alignment incidence matrix (equivalence class)

    Python 1 Updated Aug 9, 2018
  • A set of tools for quantitation of allele-specific expression from scRNA-Seq data

    Python 2 MIT Updated Aug 3, 2018
  • small R utility for mediation analysis

    R 1 3 Updated Aug 1, 2018
  • R Updated Jul 26, 2018
  • msbwt

    Forked from holtjma/msbwt

    A python toolkit for building and querying multi-string BWTs

    Python 5 MIT Updated Jun 22, 2018
  • Custom genome creation and coordinate conversion

    Python 7 3 MIT Updated Jun 15, 2018
  • A how-to guide to the Churchill Lab, The Jackson Laboratory, and Bar Harbor.

    1 1 Updated Jun 5, 2018
  • Expectation-Maximization algorithm for Allele-Specific Expression

    Python 15 9 GPL-3.0 Updated Jun 1, 2018
  • Genotype-free genome reconstruction and ASE quantification

    Python 4 2 GPL-3.0 Updated May 24, 2018
  • Updated May 24, 2018
  • Simple API into Ensembl

    Python Updated May 8, 2018
  • qtl-viewer Archived

    HTML 1 Updated Apr 17, 2018
  • R code to share among the group.

    R 1 1 Updated Mar 10, 2018
  • HTML Updated Feb 9, 2018
  • HTML Updated Feb 8, 2018
  • Python Updated Feb 1, 2018
  • Code for the Attie lab metabolite and lipid data

    R 3 Updated Jan 13, 2018
  • qtl_api_docker Archived

    R Updated Jun 30, 2017
  • Export kallisto pseudo-alignments in a sparse binary matrix format

    C++ 4 1 GPL-2.0 Updated May 3, 2017
  • Updated Apr 14, 2017
  • Python Updated Apr 11, 2017
  • Source for a paper "The Aging Proteome: Is Aging Programmed in our Genes?"

    R 2 Updated Apr 8, 2017
  • Convert BAM and SAM files to binary format with Equivalence Classes

    Python 1 ISC Updated Feb 16, 2017
  • Short Course on Systems Genetics 2015

    HTML 2 2 MIT Updated Oct 22, 2016
  • DO

    Forked from xingyaochen/DO

    Xingyao Chen's work with the DO, summer 2016

    HTML 1 Updated Aug 15, 2016
  • 21st Century Mouse Genetics

    HTML 1 GPL-3.0 Updated Aug 11, 2016
  • DOQTL tutorial for IBANGS 2016

    HTML 1 GPL-3.0 Updated Aug 9, 2016