Skip to content
Genotype-free genome reconstruction and ASE quantification
Python Makefile
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
docs
gbrs
scripts
tests
.editorconfig
.gitignore
.travis.yml
AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
Makefile
README.rst
requirements_dev.txt
setup.cfg
setup.py
tox.ini
travis_pypi_setup.py

README.rst

GBRS

https://travis-ci.org/churchill-lab/gbrs.svg?branch=master Documentation Status

Overview

GBRS is a suite of tools for reconstructing genomes using RNA-Seq data from multiparent population and quantifying allele specific expression. Although we tested it with mouse models only, GBRS should work for any multiparent populations. If you are interested in using it for other multiparent population model, please contact Kwangbom "KB" Choi <kb.choi@jax.org> at The Jackson Laboratory. For the Diversity Outbred (DO https://www.jax.org/strain/009376), Collaborative Cross (CC) mice, or F1 hybrids of CC's (CCRIX), required data files are available at ftp://churchill-lab.jax.org/pub/software/GBRS/.

References

Manuscript in preparation (Expected in 2016)

You can’t perform that action at this time.