upgrade osProtect to Rails 4.0.1

.gitignore

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+# See https://help.github.com/articles/ignoring-files for more about ignoring files.
+#
+# If you find yourself ignoring temporary files generated by your text editor
+# or operating system, you probably want to add a global ignore instead:
+#   git config --global core.excludesfile '~/.gitignore_global'
+
+# Ignore bundler config.
+/.bundle
+
+# Ignore the default SQLite database.
+/db/*.sqlite3
+/db/*.sqlite3-journal
+
+# Ignore all logfiles and tempfiles.
+/log/*.log
+/tmp
+
+# Ignore the development equivalent of /home/cleesmith/apps/osprotect/shared/reports/ (i.e. production)
+/shared
+
+.DS_Store
+root.bash_history
+__cls.txt
+/config/deploy.rb.cls
+/config/database.yml
+/config/snort.sql
+/config/environments/development.rb
+/shared

.ruby-gemset

@@ -0,0 +1 @@
+osprotect_rails4

.ruby-version

@@ -0,0 +1 @@
+ruby-2.0.0-p247

Gemfile

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+source 'https://rubygems.org'
+
+gem 'rails', '4.0.1'
+gem 'mysql2'
+gem 'composite_primary_keys', :git => "git://github.com/composite-primary-keys/composite_primary_keys.git", :branch => "ar_4.0.x"
+# gem 'cancan' # Nov 2013: does not work properly with Rails 4.0.1
+
+# use SCSS for stylesheets
+gem 'sass-rails', '~> 4.0.0'
+# use Uglifier as compressor for JavaScript assets
+gem 'uglifier', '>= 1.3.0'
+# use CoffeeScript for .js.coffee assets and views
+gem 'coffee-rails', '~> 4.0.0'
+
+# see https://github.com/sstephenson/execjs#readme for more supported runtimes
+gem 'therubyracer', platforms: :ruby
+
+# use jquery as the JavaScript library
+gem 'jquery-rails'
+# provides datepicker:
+gem 'jquery-ui-rails'
+gem "select2-rails"
+# provides jquery.nested-fields see app/assets/javascripts/application.js:
+gem 'awesome_nested_fields'
+gem 'will_paginate'
+
+# turbolinks makes following links in your web application faster. Read more: https://github.com/rails/turbolinks
+# gem 'turbolinks'
+
+# build JSON APIs with ease. Read more: https://github.com/rails/jbuilder
+gem 'jbuilder', '~> 1.2'
+
+group :doc do
+  # bundle exec rake doc:rails generates the API under doc/api.
+  gem 'sdoc', require: false
+end
+
+# use ActiveModel has_secure_password
+gem 'bcrypt-ruby', '~> 3.1.2'
+
+gem 'thin' # dev/test web app server
+gem 'foreman' # procfiles/upstart
+
+gem 'googlecharts'
+
+gem 'prawn' # pdf generator
+
+gem 'resque', :require => 'resque/server'
+gem 'resque-scheduler'
+gem 'resque_mailer'
+
+# nslookup DNS:
+# gem 'net-dns'
+# gem 'whois'
+# gem 'geoip'
+# gem 'netaddr'
+
+gem 'quiet_assets', :group => :development

Gemfile.lock

@@ -0,0 +1,205 @@
+GIT
+  remote: git://github.com/composite-primary-keys/composite_primary_keys.git
+  revision: 9fca42d62e4b312bcc595f8746785bcbd0ba47bd
+  branch: ar_4.0.x
+  specs:
+    composite_primary_keys (5.0.12)
+      activerecord (>= 4.0.0.rc1)
+
+GEM
+  remote: https://rubygems.org/
+  specs:
+    Ascii85 (1.0.2)
+    actionmailer (4.0.1)
+      actionpack (= 4.0.1)
+      mail (~> 2.5.4)
+    actionpack (4.0.1)
+      activesupport (= 4.0.1)
+      builder (~> 3.1.0)
+      erubis (~> 2.7.0)
+      rack (~> 1.5.2)
+      rack-test (~> 0.6.2)
+    activemodel (4.0.1)
+      activesupport (= 4.0.1)
+      builder (~> 3.1.0)
+    activerecord (4.0.1)
+      activemodel (= 4.0.1)
+      activerecord-deprecated_finders (~> 1.0.2)
+      activesupport (= 4.0.1)
+      arel (~> 4.0.0)
+    activerecord-deprecated_finders (1.0.3)
+    activesupport (4.0.1)
+      i18n (~> 0.6, >= 0.6.4)
+      minitest (~> 4.2)
+      multi_json (~> 1.3)
+      thread_safe (~> 0.1)
+      tzinfo (~> 0.3.37)
+    afm (0.2.0)
+    arel (4.0.1)
+    atomic (1.1.14)
+    awesome_nested_fields (0.6.4)
+      rails (>= 3.0.0)
+    bcrypt-ruby (3.1.2)
+    builder (3.1.4)
+    coffee-rails (4.0.1)
+      coffee-script (>= 2.2.0)
+      railties (>= 4.0.0, < 5.0)
+    coffee-script (2.2.0)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.6.3)
+    daemons (1.1.9)
+    dotenv (0.9.0)
+    erubis (2.7.0)
+    eventmachine (1.0.3)
+    execjs (2.0.2)
+    foreman (0.63.0)
+      dotenv (>= 0.7)
+      thor (>= 0.13.6)
+    googlecharts (1.6.8)
+    hashery (2.1.1)
+    hike (1.2.3)
+    i18n (0.6.5)
+    jbuilder (1.5.2)
+      activesupport (>= 3.0.0)
+      multi_json (>= 1.2.0)
+    jquery-rails (3.0.4)
+      railties (>= 3.0, < 5.0)
+      thor (>= 0.14, < 2.0)
+    jquery-ui-rails (4.1.0)
+      railties (>= 3.1.0)
+    json (1.8.1)
+    libv8 (3.16.14.3)
+    mail (2.5.4)
+      mime-types (~> 1.16)
+      treetop (~> 1.4.8)
+    mime-types (1.25)
+    minitest (4.7.5)
+    mono_logger (1.1.0)
+    multi_json (1.8.2)
+    mysql2 (0.3.14)
+    pdf-reader (1.3.3)
+      Ascii85 (~> 1.0.0)
+      afm (~> 0.2.0)
+      hashery (~> 2.0)
+      ruby-rc4
+      ttfunk
+    polyglot (0.3.3)
+    prawn (0.12.0)
+      pdf-reader (>= 0.9.0)
+      ttfunk (~> 1.0.2)
+    quiet_assets (1.0.2)
+      railties (>= 3.1, < 5.0)
+    rack (1.5.2)
+    rack-protection (1.5.1)
+      rack
+    rack-test (0.6.2)
+      rack (>= 1.0)
+    rails (4.0.1)
+      actionmailer (= 4.0.1)
+      actionpack (= 4.0.1)
+      activerecord (= 4.0.1)
+      activesupport (= 4.0.1)
+      bundler (>= 1.3.0, < 2.0)
+      railties (= 4.0.1)
+      sprockets-rails (~> 2.0.0)
+    railties (4.0.1)
+      actionpack (= 4.0.1)
+      activesupport (= 4.0.1)
+      rake (>= 0.8.7)
+      thor (>= 0.18.1, < 2.0)
+    rake (10.1.0)
+    rdoc (3.12.2)
+      json (~> 1.4)
+    redis (3.0.6)
+    redis-namespace (1.3.2)
+      redis (~> 3.0.4)
+    ref (1.0.5)
+    resque (1.25.1)
+      mono_logger (~> 1.0)
+      multi_json (~> 1.0)
+      redis-namespace (~> 1.2)
+      sinatra (>= 0.9.2)
+      vegas (~> 0.1.2)
+    resque-scheduler (2.3.0)
+      redis (>= 3.0.0)
+      resque (~> 1.25)
+      rufus-scheduler (~> 2.0)
+    resque_mailer (2.2.5)
+      actionmailer (>= 3.0)
+    ruby-rc4 (0.1.5)
+    rufus-scheduler (2.0.24)
+      tzinfo (>= 0.3.22)
+    sass (3.2.12)
+    sass-rails (4.0.1)
+      railties (>= 4.0.0, < 5.0)
+      sass (>= 3.1.10)
+      sprockets-rails (~> 2.0.0)
+    sdoc (0.3.20)
+      json (>= 1.1.3)
+      rdoc (~> 3.10)
+    select2-rails (3.5.1)
+      thor (~> 0.14)
+    sinatra (1.4.4)
+      rack (~> 1.4)
+      rack-protection (~> 1.4)
+      tilt (~> 1.3, >= 1.3.4)
+    sprockets (2.10.0)
+      hike (~> 1.2)
+      multi_json (~> 1.0)
+      rack (~> 1.0)
+      tilt (~> 1.1, != 1.3.0)
+    sprockets-rails (2.0.1)
+      actionpack (>= 3.0)
+      activesupport (>= 3.0)
+      sprockets (~> 2.8)
+    therubyracer (0.12.0)
+      libv8 (~> 3.16.14.0)
+      ref
+    thin (1.6.1)
+      daemons (>= 1.0.9)
+      eventmachine (>= 1.0.0)
+      rack (>= 1.0.0)
+    thor (0.18.1)
+    thread_safe (0.1.3)
+      atomic
+    tilt (1.4.1)
+    treetop (1.4.15)
+      polyglot
+      polyglot (>= 0.3.1)
+    ttfunk (1.0.3)
+    tzinfo (0.3.38)
+    uglifier (2.3.0)
+      execjs (>= 0.3.0)
+      json (>= 1.8.0)
+    vegas (0.1.11)
+      rack (>= 1.0.0)
+    will_paginate (3.0.5)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  awesome_nested_fields
+  bcrypt-ruby (~> 3.1.2)
+  coffee-rails (~> 4.0.0)
+  composite_primary_keys!
+  foreman
+  googlecharts
+  jbuilder (~> 1.2)
+  jquery-rails
+  jquery-ui-rails
+  mysql2
+  prawn
+  quiet_assets
+  rails (= 4.0.1)
+  resque
+  resque-scheduler
+  resque_mailer
+  sass-rails (~> 4.0.0)
+  sdoc
+  select2-rails
+  therubyracer
+  thin
+  uglifier (>= 1.3.0)
+  will_paginate

Procfile

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+# cls: only for dev/test environments:
+web: bundle exec thin start -p 3000
+worker: bundle exec rake resque:work QUEUE=*
+scheduler: bundle exec rake resque:scheduler

Procfile_apache_passenger

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+worker: bundle exec rake resque:work QUEUE=*
+scheduler: bundle exec rake resque:scheduler

Procfile_nginx_upstream_thin

@@ -0,0 +1,3 @@
+web: bundle exec thin start -p $PORT
+worker: bundle exec rake resque:work QUEUE=*
+scheduler: bundle exec rake resque:scheduler

README.rdoc

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+== README
+
+This README would normally document whatever steps are necessary to get the
+application up and running.
+
+Things you may want to cover:
+
+* Ruby version
+
+* System dependencies
+
+* Configuration
+
+* Database creation
+
+* Database initialization
+
+* How to run the test suite
+
+* Services (job queues, cache servers, search engines, etc.)
+
+* Deployment instructions
+
+* ...
+
+
+Please feel free to use a different markup language if you do not plan to run
+<tt>rake doc:app</tt>.

Rakefile

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+# Add your own tasks in files placed in lib/tasks ending in .rake,
+# for example lib/tasks/capistrano.rake, and they will automatically be available to Rake.
+
+require File.expand_path('../config/application', __FILE__)
+
+OsProtect::Application.load_tasks

app/assets/javascripts/application.js

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+// This is a manifest file that'll be compiled into application.js, which will include all the files
+// listed below.
+//
+// Any JavaScript/Coffee file within this directory, lib/assets/javascripts, vendor/assets/javascripts,
+// or vendor/assets/javascripts of plugins, if any, can be referenced here using a relative path.
+//
+// It's not advisable to add code directly here, but if you do, it'll appear at the bottom of the
+// the compiled file.
+//
+// Read Sprockets README (https://github.com/sstephenson/sprockets#sprockets-directives) for details
+// about supported directives.
+//
+//= require jquery
+//= require jquery_ujs
+//= require jquery.ui.all
+//= require jquery.nested-fields
+//= require_tree .