Updates python packages to their latest version #7263

smuzaffar · 2021-09-01T15:09:58Z

This PR updates all the python packages to use their latest version.

smuzaffar · 2021-09-01T15:10:07Z

please test

cmsbuild · 2021-09-01T15:10:23Z

A new Pull Request was created by @smuzaffar (Malik Shahzad Muzaffar) for branch IB/CMSSW_12_1_X/master.

@smuzaffar, @mrodozov, @iarspider can you please review it and eventually sign? Thanks.
@perrotta, @dpiparo, @qliphy you are the release manager for this.
cms-bot commands are listed here

smuzaffar · 2021-09-01T15:10:46Z

please test for slc7_ppc64le_gcc9

smuzaffar · 2021-09-01T15:11:31Z

please test for slc7_aarch64_gcc9

smuzaffar · 2021-09-01T15:11:57Z

please test for cc8_amd64_gcc9

smuzaffar · 2021-09-01T15:12:11Z

please test for slc7_amd64_gcc11

cmsbuild · 2021-09-01T17:35:41Z

-1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18213/summary.html
COMMIT: c6ec2c3
CMSSW: CMSSW_12_1_X_2021-08-31-2300/slc7_ppc64le_gcc9
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/7263/18213/install.sh to create a dev area with all the needed externals and cmssw changes.

External Build

I found compilation error when building:

+ pip_package_dirname=isort-5.9.3
+ pushd isort-5.9.3
/scratch/cmsbuild/jenkins_b/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_ppc64le_gcc9/external/py3-isort/5.9.3-eee86ad62641b9c53ac715c41cdef8c0/cmsdist-patch-py3-isort/isort-5.9.3 /scratch/cmsbuild/jenkins_b/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_ppc64le_gcc9/external/py3-isort/5.9.3-eee86ad62641b9c53ac715c41cdef8c0/cmsdist-patch-py3-isort /scratch/cmsbuild/jenkins_b/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_ppc64le_gcc9/external/py3-isort/5.9.3-eee86ad62641b9c53ac715c41cdef8c0
+ sed -i -e '/.*futures.*/d' isort.egg-info/requires.txt setup.py
sed: can't read isort.egg-info/requires.txt: No such file or directory
error: Bad exit status from /scratch/cmsbuild/jenkins_b/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.6Tt8ou (%build)


RPM build errors:
Macro %rpmbuild_libdir defined but not used within scope
Bad exit status from /scratch/cmsbuild/jenkins_b/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.6Tt8ou (%build)

cmsbuild · 2021-09-01T18:39:56Z

-1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18212/summary.html
COMMIT: c6ec2c3
CMSSW: CMSSW_12_1_X_2021-08-31-2300/slc7_amd64_gcc900
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/7263/18212/install.sh to create a dev area with all the needed externals and cmssw changes.

External Build

I found compilation error when building:

File "/data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/slc7_amd64_gcc900/external/py3-pip/20.3.3-llifpc/lib/python3.9/site-packages/pip/_internal/utils/subprocess.py", line 240, in call_subprocess
raise InstallationError(exc_msg)
pip._internal.exceptions.InstallationError: Command errored out with exit status 1: /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/slc7_amd64_gcc900/external/python3/3.9.6/bin/python3 /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/slc7_amd64_gcc900/external/py3-pip/20.3.3-llifpc/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_amd64_gcc900/external/py3-defusedxml/0.7.1-563437b75603347164bc31f03d798e90/cmsdist-tmp/tmphwa63h98 Check the logs for full command output.
Removed file:///data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_amd64_gcc900/external/py3-defusedxml/0.7.1-563437b75603347164bc31f03d798e90/src.tar.gz from build tracker '/data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_amd64_gcc900/external/py3-defusedxml/0.7.1-563437b75603347164bc31f03d798e90/cmsdist-tmp/pip-req-tracker-e438ek9j'
Removed build tracker: '/data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_amd64_gcc900/external/py3-defusedxml/0.7.1-563437b75603347164bc31f03d798e90/cmsdist-tmp/pip-req-tracker-e438ek9j'
error: Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.gSoXUv (%build)


RPM build errors:
Macro %rpmbuild_libdir defined but not used within scope
Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.gSoXUv (%build)

cmsbuild · 2021-09-01T18:42:13Z

-1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18215/summary.html
COMMIT: c6ec2c3
CMSSW: CMSSW_12_1_X_2021-08-31-1100/slc7_amd64_gcc11
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/7263/18215/install.sh to create a dev area with all the needed externals and cmssw changes.

External Build

I found compilation error when building:

patching file lib/sqlalchemy/connectors/frontier.py
patching file lib/sqlalchemy/dialects/oracle/__init__.py
Hunk #1 FAILED at 8.
1 out of 1 hunk FAILED -- saving rejects to file lib/sqlalchemy/dialects/oracle/__init__.py.rej
patching file lib/sqlalchemy/dialects/oracle/frontier.py
error: Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.IsFX9h (%build)


RPM build errors:
line 36: It's not recommended to have unversioned Obsoletes: Obsoletes: external+py3-sqlalchemy+1.4.23-a695c86837c44977996e6b88b7789a65
Macro expanded in comment on line 341: %{pkginstroot}/bin/*

cmsbuild · 2021-09-01T19:34:26Z

-1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18214/summary.html
COMMIT: c6ec2c3
CMSSW: CMSSW_12_1_X_2021-08-31-2300/cc8_amd64_gcc9
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/7263/18214/install.sh to create a dev area with all the needed externals and cmssw changes.

External Build

I found compilation error when building:

File "/data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/cc8_amd64_gcc9/external/py3-pip/20.3.3-67f8042e1ea9b2137c8d4cc0e2d1175f/lib/python3.9/site-packages/pip/_internal/utils/subprocess.py", line 240, in call_subprocess
raise InstallationError(exc_msg)
pip._internal.exceptions.InstallationError: Command errored out with exit status 1: /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/cc8_amd64_gcc9/external/python3/3.9.6-08d3bbf663e5ec71dd2cc6e7be45d0b0/bin/python3 /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/cc8_amd64_gcc9/external/py3-pip/20.3.3-67f8042e1ea9b2137c8d4cc0e2d1175f/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/cc8_amd64_gcc9/external/py3-immutables/0.16-2668801d1ea7c02c6cae98cf8d5eee4f/cmsdist-tmp/tmp2smyg2f4 Check the logs for full command output.
Removed file:///data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/cc8_amd64_gcc9/external/py3-immutables/0.16-2668801d1ea7c02c6cae98cf8d5eee4f/src.tar.gz from build tracker '/data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/cc8_amd64_gcc9/external/py3-immutables/0.16-2668801d1ea7c02c6cae98cf8d5eee4f/cmsdist-tmp/pip-req-tracker-brriqwx9'
Removed build tracker: '/data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/cc8_amd64_gcc9/external/py3-immutables/0.16-2668801d1ea7c02c6cae98cf8d5eee4f/cmsdist-tmp/pip-req-tracker-brriqwx9'
error: Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.aJ3esU (%build)


RPM build errors:
line 36: It's not recommended to have unversioned Obsoletes: Obsoletes: external+py3-immutables+0.16-2668801d1ea7c02c6cae98cf8d5eee4f
Macro expanded in comment on line 337: %{pkginstroot}/bin/*

cmsbuild · 2021-09-02T04:01:44Z

-1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18220/summary.html
COMMIT: c6ec2c3
CMSSW: CMSSW_12_1_X_2021-08-31-2300/slc7_aarch64_gcc9
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/7263/18220/install.sh to create a dev area with all the needed externals and cmssw changes.

External Build

I found compilation error when building:

+ pip_package_dirname=isort-5.9.3
+ pushd isort-5.9.3
/home/cmsbuild/jenkins_c/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_aarch64_gcc9/external/py3-isort/5.9.3-eee86ad62641b9c53ac715c41cdef8c0/cmsdist-patch-py3-isort/isort-5.9.3 /home/cmsbuild/jenkins_c/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_aarch64_gcc9/external/py3-isort/5.9.3-eee86ad62641b9c53ac715c41cdef8c0/cmsdist-patch-py3-isort /home/cmsbuild/jenkins_c/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_aarch64_gcc9/external/py3-isort/5.9.3-eee86ad62641b9c53ac715c41cdef8c0
+ sed -i -e '/.*futures.*/d' isort.egg-info/requires.txt setup.py
sed: can't read isort.egg-info/requires.txt: No such file or directory
error: Bad exit status from /home/cmsbuild/jenkins_c/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.WXkdkT (%build)


RPM build errors:
Macro %rpmbuild_libdir defined but not used within scope
Bad exit status from /home/cmsbuild/jenkins_c/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.WXkdkT (%build)

cmsbuild · 2021-09-02T15:43:55Z

Pull request #7263 was updated.

smuzaffar · 2021-09-02T15:44:24Z

test parameters:

full_cmssw = true

smuzaffar · 2021-09-02T15:44:31Z

please test

cmsbuild · 2021-09-02T17:59:37Z

-1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18259/summary.html
COMMIT: 11821ed
CMSSW: CMSSW_12_1_X_2021-09-02-1100/slc7_amd64_gcc900
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week0/cms-sw/cmsdist/7263/18259/install.sh to create a dev area with all the needed externals and cmssw changes.

External Build

I found compilation error when building:

ERROR: no such package '@tf_runtime//': java.io.IOException: Error downloading [http://mirror.tensorflow.org/github.com/tensorflow/runtime/archive/b570a1921c9e55ac53c8972bd2bfd37cd0eb510d.tar.gz, https://github.com/tensorflow/runtime/archive/b570a1921c9e55ac53c8972bd2bfd37cd0eb510d.tar.gz] to /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/BUILD/slc7_amd64_gcc900/external/tensorflow-sources/2.6.0-625c0a85de668f6357505f9c5d750b61/build/4d16e41fbcf077a0cee8cdd41d7160c1/external/tf_runtime/temp213067392128748662/b570a1921c9e55ac53c8972bd2bfd37cd0eb510d.tar.gz: connect timed out
INFO: Elapsed time: 57.594s
INFO: 0 processes.
FAILED: Build did NOT complete successfully (0 packages loaded)
FAILED: Build did NOT complete successfully (0 packages loaded)
error: Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.ik8D04 (%build)


RPM build errors:
Macro %rpmbuild_libdir defined but not used within scope
Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.ik8D04 (%build)

smuzaffar · 2021-09-03T04:56:10Z

please test

smuzaffar · 2021-09-05T14:59:05Z

please test for cc8_amd64_gcc9

cmsbuild · 2021-09-05T19:20:48Z

-1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18323/summary.html
COMMIT: 0e0d104
CMSSW: CMSSW_12_1_X_2021-09-05-0000/cc8_amd64_gcc9
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week1/cms-sw/cmsdist/7263/18323/install.sh to create a dev area with all the needed externals and cmssw changes.

External Build

I found compilation error when building:

Target //tensorflow/tools/pip_package:build_pip_package failed to build
INFO: Elapsed time: 56.712s, Critical Path: 6.44s
INFO: 697 processes: 484 internal, 213 local.
FAILED: Build did NOT complete successfully
FAILED: Build did NOT complete successfully
error: Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.2VdGOQ (%build)


RPM build errors:
line 37: It's not recommended to have unversioned Obsoletes: Obsoletes: external+tensorflow-sources+2.6.0-3260aab615e98f6ad9f0340a87f9c13f
Bad exit status from /data/cmsbld/jenkins/workspace/ib-run-pr-tests/testBuildDir/tmp/rpm-tmp.2VdGOQ (%build)

cmsbuild · 2021-09-05T20:42:52Z

Pull request #7263 was updated.

smuzaffar · 2021-09-05T20:43:01Z

please test for cc8_amd64_gcc9

smuzaffar · 2021-09-05T20:43:54Z

please test

cmsbuild · 2021-09-06T06:54:19Z

+1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18327/summary.html
COMMIT: aff6168
CMSSW: CMSSW_12_1_X_2021-09-05-0000/slc7_amd64_gcc900
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week1/cms-sw/cmsdist/7263/18327/install.sh to create a dev area with all the needed externals and cmssw changes.

The following merge commits were also included on top of IB + this PR after doing git cms-merge-topic:

@bsunanda Run3-hcx318 Correct a few analyzers in Calibration/HcalCalibAlgos aganist static analyzers cmssw#35153
@bsunanda Run3-hcx319 Make use of ESGetToken in SimCalorimetry/HcalSimProducers cmssw#35156
@bsunanda Run3-371X Use of ESGetToken in Calibration/HcalCalibAlgos cmssw#35155
@dildick Add CSC TP efficiency producer in standard Validation sequence cmssw#35135
@Dr15Jones Added esConsumes to modules in SimMuon/MCTruth cmssw#35134
@ChrisMisan PCL of diamond sampic offset calibration cmssw#35029

You can see more details here:
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18327/git-recent-commits.json
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18327/git-merge-result

Comparison Summary

Summary:

No significant changes to the logs found
Reco comparison results: 0 differences found in the comparisons
DQMHistoTests: Total files compared: 39
DQMHistoTests: Total histograms compared: 3000491
DQMHistoTests: Total failures: 0
DQMHistoTests: Total nulls: 0
DQMHistoTests: Total successes: 3000469
DQMHistoTests: Total skipped: 22
DQMHistoTests: Total Missing objects: 0
DQMHistoSizes: Histogram memory added: 235.416 KiB( 38 files compared)
DQMHistoSizes: changed ( 10024.0,... ): 13.848 KiB MuonCSCDigisV/CSCDigiTask
Checked 165 log files, 37 edm output root files, 39 DQM output files
TriggerResults: no differences found

smuzaffar · 2021-09-06T07:26:46Z

looks good

smuzaffar · 2021-09-06T07:27:04Z

+externals

cmsbuild · 2021-09-06T07:27:23Z

This pull request is fully signed and it will be integrated in one of the next IB/CMSSW_12_1_X/master IBs (tests are also fine). This pull request will now be reviewed by the release team before it's merged. @perrotta, @dpiparo, @qliphy (and backports should be raised in the release meeting by the corresponding L2)

cmsbuild · 2021-09-06T11:21:06Z

+1

Summary: https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18326/summary.html
COMMIT: aff6168
CMSSW: CMSSW_12_1_X_2021-09-05-0000/cc8_amd64_gcc9
User test area: For local testing, you can use /cvmfs/cms-ci.cern.ch/week1/cms-sw/cmsdist/7263/18326/install.sh to create a dev area with all the needed externals and cmssw changes.

The following merge commits were also included on top of IB + this PR after doing git cms-merge-topic:

@bsunanda Run3-hcx318 Correct a few analyzers in Calibration/HcalCalibAlgos aganist static analyzers cmssw#35153
@bsunanda Run3-hcx319 Make use of ESGetToken in SimCalorimetry/HcalSimProducers cmssw#35156
@bsunanda Run3-371X Use of ESGetToken in Calibration/HcalCalibAlgos cmssw#35155
@dildick Add CSC TP efficiency producer in standard Validation sequence cmssw#35135
@Dr15Jones Added esConsumes to modules in SimMuon/MCTruth cmssw#35134
@ChrisMisan PCL of diamond sampic offset calibration cmssw#35029

You can see more details here:
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18326/git-recent-commits.json
https://cmssdt.cern.ch/SDT/jenkins-artifacts/pull-request-integration/PR-632f12/18326/git-merge-result

Comparison Summary

Summary:

No significant changes to the logs found
Reco comparison results: 57312 differences found in the comparisons
DQMHistoTests: Total files compared: 39
DQMHistoTests: Total histograms compared: 3000491
DQMHistoTests: Total failures: 298291
DQMHistoTests: Total nulls: 242
DQMHistoTests: Total successes: 2701936
DQMHistoTests: Total skipped: 22
DQMHistoTests: Total Missing objects: 0
DQMHistoSizes: Histogram memory added: 228.58 KiB( 38 files compared)
DQMHistoSizes: changed ( 10024.0,... ): 13.848 KiB MuonCSCDigisV/CSCDigiTask
DQMHistoSizes: changed ( 10224.0 ): -0.117 KiB SiStrip/MechanicalView
DQMHistoSizes: changed ( 136.874 ): -0.023 KiB JetMET/SUSYDQM
DQMHistoSizes: changed ( 250202.181 ): -0.176 KiB SiStrip/MechanicalView
DQMHistoSizes: changed ( 25202.0 ): 0.010 KiB SiStrip/MechanicalView
DQMHistoSizes: changed ( 4.53 ): 0.004 KiB JetMET/SUSYDQM
DQMHistoSizes: changed ( 7.3 ): -6.532 KiB SiStrip/MechanicalView
Checked 165 log files, 37 edm output root files, 39 DQM output files
TriggerResults: found differences in 14 / 38 workflows

Dr15Jones · 2021-09-06T13:06:06Z

Are all the failed comparisons because the histogram entries for this PR all missing?

smuzaffar · 2021-09-06T19:59:17Z

@Dr15Jones , for production arch (slc7_amd64_gcc900), there are no comparison diffs ( #7263 (comment) ).
For CC8 ( #7263 (comment) ) , yes there are a lot of diffs but I do not know why (may be due to slc7 baseline vs cc8 PR)

Updates python packages to their latest version

c6ec2c3

cmsbuild added externals-pending orp-pending pending-signatures tests-started labels Sep 1, 2021

cmsbuild added tests-rejected and removed tests-started labels Sep 1, 2021

updated dependencies for new versions

11821ed

cmsbuild removed the tests-rejected label Sep 2, 2021

cmsbuild added the tests-pending label Sep 2, 2021

cmsbuild added tests-started and removed tests-pending labels Sep 2, 2021

cmsbuild added tests-rejected and removed tests-started labels Sep 2, 2021

cmsbuild added the tests-started label Sep 5, 2021

Update build-with-pip.file

aff6168

cmsbuild added tests-pending and removed tests-started labels Sep 5, 2021

cmsbuild added tests-started and removed tests-pending labels Sep 5, 2021

cmsbuild added tests-approved and removed tests-started labels Sep 6, 2021

smuzaffar merged commit c0681ef into IB/CMSSW_12_1_X/master Sep 6, 2021

cmsbuild added externals-approved fully-signed and removed externals-pending pending-signatures labels Sep 6, 2021

mrodozov deleted the py3-update branch September 6, 2021 13:10

mrodozov restored the py3-update branch September 6, 2021 13:10

cmsbuild mentioned this pull request Sep 6, 2021

Updated root to tip of branch master #7270

Closed

cmsbuild mentioned this pull request Sep 6, 2021

Updated root to tip of branch v6-24-00-patches #7271

Closed

smuzaffar deleted the py3-update branch September 7, 2021 08:20

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Updates python packages to their latest version #7263

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Updates python packages to their latest version #7263

Updates python packages to their latest version #7263

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External Build

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External Build

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External Build

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External Build

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External Build

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External Build

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Comparison Summary

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Comparison Summary

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