Pull Request with primitive-math #41 (#43)

* Including primitive-math to fix
#41.

Code originally from: https://github.com/ztellman/primitive-math
commit: 7654d4c86a6a93639dd4d6d074a1fcb5ee64ebc2

* Updating packages and namespaces of primitive to be multi segment.

See: #41

java/tech/v3/datatype/BitmapMap.java

@@ -14,7 +14,7 @@
 import clojure.lang.ASeq;
 import clojure.lang.Util;
 import clojure.lang.RT;
-import primitive_math.Primitives;
+import com.github.ztellman.primitive_math.Primitives;
 import java.io.Serializable;
 import java.util.NoSuchElementException;
 import java.util.List;

project.clj

@@ -7,7 +7,6 @@
                  [org.ow2.asm/asm                  "9.0"]
                  [insn                             "0.5.2"]
                  [camel-snake-kebab                "0.4.2"]
-                 [primitive-math                   "0.1.6"]
                  [it.unimi.dsi/fastutil            "8.2.1"]
                  [org.xerial.larray/larray-mmap    "0.4.1"]
                  [org.apache.commons/commons-math3 "3.6.1"]
@@ -17,8 +16,8 @@
                  [techascent/tech.jna "4.05" :scope "provided"]
                  ;;Many things require guava, so we may as well have latest version
                  [com.google.guava/guava "30.1.1-jre"]]
-  :java-source-paths ["java"]
-  :source-paths ["src" "classes"]
+  :java-source-paths ["java" "third-party"]
+  :source-paths ["src" "classes" "third-party"]
   :profiles {:dev
              {:dependencies [[criterium "0.4.5"]
                              [uncomplicate/neanderthal "0.35.0"]

src/tech/v3/datatype/argops.clj

@@ -14,7 +14,7 @@
             [tech.v3.datatype.errors :as errors]
             [tech.v3.datatype.argtypes :as argtypes]
             [tech.v3.datatype.const-reader :as const-reader]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [it.unimi.dsi.fastutil.bytes ByteComparator]
            [it.unimi.dsi.fastutil.shorts ShortComparator]
            [it.unimi.dsi.fastutil.ints IntArrays IntComparator]

src/tech/v3/datatype/array_buffer.clj

@@ -4,7 +4,7 @@
             [tech.v3.datatype.casting :as casting]
             [tech.v3.datatype.packing :as packing]
             [tech.v3.datatype.pprint :as dtype-pp]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [clojure.lang IObj Counted Indexed IFn]
            [tech.v3.datatype Buffer ArrayHelpers BufferCollection BinaryBuffer
             ByteConversions]

src/tech/v3/datatype/binary_op.clj

@@ -3,7 +3,7 @@
             [tech.v3.datatype.casting :as casting]
             [tech.v3.datatype.dispatch :as dispatch]
             [tech.v3.datatype.protocols :as dtype-proto]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype LongReader DoubleReader ObjectReader
             BinaryOperator Buffer
             BinaryOperators$LongBinaryOperator

src/tech/v3/datatype/binary_pred.clj

@@ -4,7 +4,7 @@
             [tech.v3.datatype.base :as dtype-base]
             [tech.v3.datatype.dispatch :as dispatch]
             [tech.v3.datatype.errors :as errors]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype BinaryPredicate Buffer
             BinaryPredicates$BooleanBinaryPredicate
             BinaryPredicates$DoubleBinaryPredicate

src/tech/v3/datatype/casting.clj

@@ -1,7 +1,7 @@
 (ns tech.v3.datatype.casting
   (:refer-clojure :exclude [cast])
   (:require [clojure.set :as c-set]
-            [primitive-math :as pmath]
+            [com.github.ztellman.primitive-math :as pmath]
             [tech.v3.datatype.protocols :as dtype-proto]
             [tech.v3.datatype.errors :as errors])
   (:import [java.util Map Set HashSet]

src/tech/v3/datatype/convolve.clj

@@ -7,7 +7,7 @@
             [tech.v3.datatype.functional :as dfn]
             [tech.v3.datatype.errors :as errors]
             [tech.v3.parallel.for :as pfor]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype Convolve1D Convolve1D$Mode ArrayHelpers DoubleReader
             Convolve1D$EdgeMode Convolve1D$Edging Complex]
            [java.util.function BiFunction]

src/tech/v3/datatype/double_ops.clj

@@ -1,5 +1,5 @@
 (ns tech.v3.datatype.double-ops
-  (:require [primitive-math :as pmath]))
+  (:require [com.github.ztellman.primitive-math :as pmath]))
 
 
 (defmacro SIGNIFICAND-BITS

src/tech/v3/datatype/functional.clj

@@ -29,7 +29,7 @@
             [tech.v3.parallel.for :as parallel-for]
             [tech.v3.datatype.list :as dtype-list]
             [tech.v3.datatype.graal-native :as graal-native]
-            [primitive-math :as pmath]
+            [com.github.ztellman.primitive-math :as pmath]
             [clojure.tools.logging :as log]
             [clojure.set :as set])
   (:import [tech.v3.datatype BinaryOperator Buffer

src/tech/v3/datatype/functional/opt.clj

@@ -4,7 +4,7 @@
   has any missing values."
   (:require [tech.v3.datatype.base :as dt-base]
             [tech.v3.parallel.for :as pfor]
-            [primitive-math :as pmath]
+            [com.github.ztellman.primitive-math :as pmath]
             [tech.v3.datatype.errors :as errors])
   (:import [tech.v3.datatype Buffer]))
 

src/tech/v3/datatype/gradient.clj

@@ -4,7 +4,7 @@
   (:require [tech.v3.datatype.base :as dt-base]
             [tech.v3.datatype.casting :as casting]
             [tech.v3.datatype.errors :as errors]
-            [primitive-math :as pmath]
+            [com.github.ztellman.primitive-math :as pmath]
             [tech.v3.datatype.protocols :as dtype-proto])
   (:import [tech.v3.datatype Buffer DoubleReader LongReader ObjectReader]))
 

src/tech/v3/datatype/io_concat_buffer.clj

@@ -3,7 +3,7 @@
             [tech.v3.datatype.protocols :as dtype-proto]
             [tech.v3.datatype.base :as dtype-base]
             [tech.v3.datatype.errors :as errors]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [java.util List]
            [tech.v3.datatype Buffer]))
 

src/tech/v3/datatype/io_sub_buffer.clj

@@ -1,7 +1,7 @@
 (ns tech.v3.datatype.io-sub-buffer
   (:require [tech.v3.datatype.protocols :as dtype-proto]
             [tech.v3.datatype.casting :as casting]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype Buffer]
            [clojure.lang IMeta]))
 

src/tech/v3/datatype/native_buffer.clj

@@ -11,7 +11,7 @@
             [tech.v3.datatype.graal-native :as graal-native]
             [tech.v3.parallel.for :as parallel-for]
             [clojure.tools.logging :as log]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype UnsafeUtil]
            [sun.misc Unsafe]
            [tech.v3.datatype Buffer BufferCollection BinaryBuffer]

src/tech/v3/datatype/rolling.clj

@@ -4,7 +4,7 @@
             [tech.v3.datatype.casting :as casting]
             [tech.v3.datatype.packing :as packing]
             [tech.v3.datatype.emap :as emap]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype Buffer DoubleBuffer LongBuffer ObjectBuffer
             LongReader DoubleReader ObjectReader]
            [java.util Iterator]))

src/tech/v3/datatype/statistics.clj

@@ -9,7 +9,7 @@
             [tech.v3.datatype.array-buffer :as array-buffer]
             [tech.v3.parallel.for :as parallel-for]
             [tech.v3.datatype.list]
-            [primitive-math :as pmath]
+            [com.github.ztellman.primitive-math :as pmath]
             [clojure.set :as set])
   (:import [tech.v3.datatype DoubleReduction UnaryOperator BufferIterator
             Buffer

src/tech/v3/datatype/struct.clj

@@ -43,7 +43,7 @@ user> *2
             [tech.v3.datatype.protocols :as dtype-proto]
             [tech.v3.datatype.errors :as errors]
             [tech.v3.datatype.copy-make-container :as dtype-cmc]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype BinaryBuffer Buffer ObjectBuffer]
            [java.util.concurrent ConcurrentHashMap]
            [java.util RandomAccess List Map LinkedHashSet Collection]

src/tech/v3/datatype/unary_op.clj

@@ -4,7 +4,7 @@
             [tech.v3.datatype.dispatch :as dispatch]
             [tech.v3.datatype.protocols :as dtype-proto]
             [tech.v3.datatype.double-ops :refer [get-significand]]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype LongReader DoubleReader ObjectReader
             UnaryOperator Buffer
             UnaryOperators$DoubleUnaryOperator

src/tech/v3/datatype/wavelet.clj

@@ -5,7 +5,7 @@
             [tech.v3.datatype.functional :as dfn]
             [tech.v3.datatype.base :as dt-base]
             [tech.v3.tensor :as dtt]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype DoubleReader]))
 
 (set! *warn-on-reflection* true)

src/tech/v3/tensor.clj

@@ -36,7 +36,7 @@
             [tech.v3.tensor.tensor-copy :as tens-cpy]
             [tech.v3.datatype.export-symbols :as export-symbols]
             [tech.v3.parallel.for :as parallel-for]
-            [primitive-math :as pmath]
+            [com.github.ztellman.primitive-math :as pmath]
             [tech.v3.resource :as resource]
             [clojure.tools.logging :as log])
   (:import [clojure.lang IObj]

src/tech/v3/tensor/dimensions/analytics.clj

@@ -4,7 +4,7 @@
             [tech.v3.datatype.protocols :as dtype-proto]
             [tech.v3.datatype.list :as dtype-list]
             [tech.v3.tensor.dimensions.shape :as shape]
-            [primitive-math :as pmath])
+            [com.github.ztellman.primitive-math :as pmath])
   (:import [tech.v3.datatype Buffer PrimitiveList]
            [java.util List]))
 

src/tech/v3/tensor/dimensions/global_to_local.clj

@@ -6,7 +6,7 @@
             [tech.v3.datatype.index-algebra :as idx-alg]
             [tech.v3.datatype.graal-native :as graal-native]
             [tech.v3.datatype.errors :as errors]
-            [primitive-math :as pmath]
+            [com.github.ztellman.primitive-math :as pmath]
             [camel-snake-kebab.core :as csk]
             [clojure.tools.logging :as log])
   (:import [tech.v3.datatype Buffer LongReader LongNDReader]