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fix test
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cokelaer committed Jun 25, 2018
1 parent 93615d9 commit 1f8d0b6
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions test/test_ensembl.py
Expand Up @@ -203,11 +203,12 @@ def test_sequences(ensembl):

seq = ensembl.get_sequence_by_id('ENSE00001154485', expand_5prime=10,
frmt='fasta', type='genomic')
assert seq == u'>ENSE00001154485 chromosome:GRCh38:7:140924566:140924774:-1\nCCCAGCTCTCCGCCTCCCTTCCCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTC\nTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGG\nCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTT\nCGGCTGCGGACCCTGCCATTCCGGAGGAG\n'
assert seq == ">ENSE00001154485 chromosome:GRCh38:7:140924566:140924752:-1\nCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCT\nGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGA\nGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCC\nGGAGGAG\n"


res = ensembl.get_sequence_by_id('ENSG00000157764', frmt='seqxml',
type='protein', multiple_sequences=1)
assert 'XSTT' in res
assert 'MAAL' in res

res = ensembl.get_sequence_by_id('GENSCAN00000000001', frmt='json',
object_type='predictiontranscript', db_type='core',
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