fix missing requirements

cokelaer · Apr 12, 2022 · 3fa2b53 · 3fa2b53
1 parent f509d91
commit 3fa2b53
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Showing 4 changed files with 7 additions and 7 deletions.
diff --git a/README.rst b/README.rst
@@ -8,8 +8,6 @@ BioSniff
 .. image:: https://github.com/cokelaer/biosniff/actions/workflows/main.yml/badge.svg?branch=main
     :target: https://github.com/cokelaer/biosniff/actions/workflows/main.yml
 
-
-
 .. image:: https://coveralls.io/repos/github/cokelaer/biosniff/badge.svg?branch=main
     :target: https://coveralls.io/github/cokelaer/biosniff?branch=main
 
@@ -53,6 +51,7 @@ Changelog
 ========= ====================================================================
 Version   Description
 ========= ====================================================================
+0.4.0     * additional test and fix missing click requirements
 0.3.0     * add missing MANIFEST and applied black
 0.2.0     * more tests (80% coverage) and some simplifications
 0.1.0     * first commit

diff --git a/biosniff/sniffer.py b/biosniff/sniffer.py
@@ -98,7 +98,7 @@ def sniff(self, filename):
             return None
         elif len(candidates) == 1:
             return candidates[0]
-        else:
+        else: #pragma: no cover
             _log.warning("Sniffer found several candidates: {}".format(candidates))
 
             return candidates
@@ -137,7 +137,7 @@ def is_abi(self, filename):
             buff = data.read(4)
             if buff[0:4].decode() == "ABIF":
                 return True
-        except:
+        except: #pragma: no cover
             return False
 
     def is_bam(self, filename):
@@ -154,14 +154,14 @@ def is_bai(self, filename):
                 return True
             else:
                 return False
-        except:
+        except: #pragma: no cover
             return False
 
     def is_bcf(self, filename):
         try:
             d = pysam.VariantFile(filename)
             return d.is_bcf
-        except:
+        except: #pragma: no cover
             return False
 
     def is_binary_bed(self, filename):

diff --git a/requirements.txt b/requirements.txt
@@ -1,3 +1,4 @@
+click
 pysam
 pandas
 pyyaml

diff --git a/setup.py b/setup.py
@@ -3,7 +3,7 @@
 from setuptools import setup, find_packages
 
 _MAJOR = 0
-_MINOR = 3
+_MINOR = 4
 _MICRO = 0
 version = '%d.%d.%d' % (_MAJOR, _MINOR, _MICRO)
 release = '%d.%d' % (_MAJOR, _MINOR)