add test for the main app

cokelaer · Aug 5, 2020 · beb62ac · beb62ac
1 parent 82957a7
commit beb62ac
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Showing 2 changed files with 14 additions and 10 deletions.
diff --git a/damona/registry.py b/damona/registry.py
@@ -41,22 +41,22 @@ def __init__(self):
         self.discovery()
 
     def _read_registry(self, registry):
-        if os.path.exists(registry) is False:
+        if os.path.exists(registry) is False: #pragma: no cover
             raise IOError("incorrect input filename {}".format(registry))
 
         # read the yaml
         data = yaml.load(open(registry, "r").read(), Loader=Loader)
 
         # some checks
         for k, v in data.items():
-            if "class" not in v: 
+            if "class" not in v: #pragma: no cover
                 logger.warning("missing class in {}".format(registry))
-            if "version" not in v:
+            if "version" not in v: #pragma: no cover
                 logger.warning("missing version in {}".format(registry))
-            if "download" not in v:
+            if "download" not in v: #pragma: no cover
                 logger.warning("missing download in {}".format(registry))
             if data[k]["class"] == "exe":
-                if "binaries" not in v:
+                if "binaries" not in v: #pragma: no cover
                     logger.warning("missing binaries field in {}".format(registry))
         return data
 
@@ -79,12 +79,9 @@ def discovery(self):
 
         for filename in self._singularity_files:
             p = pathlib.Path(filename)
-            if (p.parent / "registry.yaml").exists() is False:
+            if (p.parent / "registry.yaml").exists() is False: #pragma: no cover
                 logger.warning("Missing registry in {}. You may use 'damona registry {} to start with".format(p.parent, p.parent))
 
-    def get_downloadable_link(self, name):
-        pass
-
     def create_registry(self, path):
         #recipes = glob.glob(pathlib.Path(path).absolute() / "Singularity*")
         recipes = glob.glob(path +  "/Singularity*")

diff --git a/test/test_damona.py b/test/test_damona.py
@@ -3,6 +3,13 @@
 import subprocess
 
 
+def test_damona_app():
+    from click.testing import CliRunner
+    from damona.script import install
+    runner = CliRunner()
+    results = runner.invoke(install, ['fastqc:0.11.9', '--dryrun'])
+    assert results.exit_code == 0
+
 def test_python_pull():
     p = pull.Pull(dryrun=True)
     p.pull("fastqc:0.11.9")
@@ -35,7 +42,7 @@ def test_list():
     cmd = "damona list --help"
     subprocess.call(cmd.split())
 
-    cmd = "damona list"
+    cmd = "damona list --pattern qc"
     subprocess.call(cmd.split())
 
 def test_develop():