New refreshed QC plots and quick bld ct mtx

• new QC plots and faster more memory efficient fct to bld ct mtx.

New TSS enrichment QC and LSI

Major additions to this new release:

• TSS enrichment QC with epi.pp.tss_enrichment and epi.pl.tss_enrichment
• Latent Semantic Indexing available with epi.pp.tfidf, epi.pp.lsi
• In combination with the LSI we added epi.pp.correlation_component and epi.pp.filter_component to correct coverage discrepancy between cell barcodes.

0.3.1: Merge pull request #86 from colomemaria/update_load_features

Fix bld_mtx_bed function. Change default parameter of geneactivity function. Easier to load features (bed, gtf, gff files and macs2 peaks)

0.3.0

• no more api. Now --> import episcanpy as epi
• no more anndata2ri requirement
• update bld mtx functions
• update find genes and gene activity functions

0.2.2

Update _bld_atac_mtx2.py

0.2.1

Update ct.py

0.2.0

add new functions to episcanpy like snap2anndata to convert snap files into h5ad files.
resolve compatibility problems with latest version of scanpy

0.1.10

Update utils.py

0.1.8

Update tutorial

hackathon

Merge pull request #46 from colomemaria/Anna

Website update