Sanitize Blast inputs

combogenomics · Aug 30, 2012 · 88c3021 · 88c3021
1 parent 37af0b6
commit 88c3021
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/CONTIGuator.py b/CONTIGuator.py
@@ -1433,9 +1433,9 @@ def FillBlastPar(self, query='in.txt', db='db', out='out.txt', evalue='10',
         self.mylog.WriteLog('INF', 'Blast parameters: '+str(query)+' '+
                         str(db)+' '+str(out)+' '+str(evalue)+' '+str(outfmt)+
                         str(task)+' '+str(additional)+'')
-        self._query=query
-        self._db=db
-        self._out=out
+        self._query='"%s"'%query
+        self._db='"%s"'%db
+        self._out='"%s"'%out
         self._evalue=evalue
         self._outfmt=outfmt
         self._task=task