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Incorrect feature location in PseudoContig.embl #4

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mscook opened this issue Jun 19, 2012 · 2 comments
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Incorrect feature location in PseudoContig.embl #4

mscook opened this issue Jun 19, 2012 · 2 comments
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@mscook
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mscook commented Jun 19, 2012

For context (running the example from CONTIGuator source) -

...
RN [1]
RX PUBMED; 21693004.
RA Marco Galardini, Emanuele G Biondi, Marco Bazzicalupo, Alessio Mengoni;
RT "CONTIGuator: a bacterial genomes finishing tool for structural insights on
RT draft genomes";
RL Source Code for Biology and Medicine 2011, 6:11 doi:10.1186/1751-0473-6-11
XX
FH Key Location/Qualifiers
FT Contig 2..29168
...

The first feature begins at 2. This is not correct.

I've seen this is other runs as well.

Cheers

Mitch

@ghost ghost assigned mgalardini Jun 19, 2012
@mgalardini
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Ah, snap! I was aware of this bug but i was pretty sure it was fixed: i'll look into it, it shouldn't be that much of a problem.

@mgalardini
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It appears to be something caused by BioPython: i checked the position right before the embl file is written and it is correctly 1.
I'll see if i can do something about it, otherwise i'll close the issue.

mgalardini added a commit to mgalardini/CONTIGuator that referenced this issue Jun 20, 2012
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