Add worklists #784

jmsmkn · 2019-04-08T11:40:24Z

No description provided.

commit 5e7457ab1022352beeed15c23b9f81e7d9169add Author: Karel <karelgerbrands@gmail.com> Date: Wed Apr 3 14:34:32 2019 +0200 - Adds the ability to query Patient API table on image type commit ecb3804c80da795dc976db5f675fbf74de3e2157 Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 17:35:23 2019 +0200 - Replaces get_view with direct client get commit 21fc3c1b92ed3b2774a3e7e5a7b55fb9c34140fa Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 13:57:12 2019 +0200 - Fixes a tuple being incorrectly initialized commit 79b43fe2699727569b059922ae53df206eb23d89 Merge: 54eb4f9a 9a763a02 Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 13:46:58 2019 +0200 Merge branch 'master' of https://github.com/comic/grand-challenge.org into pathology_support commit 54eb4f9a25f146b54a5d9973f3407971c6ad60e0 Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 13:44:17 2019 +0200 - Fixes black formatting - Fixes factories missing for permission tests commit f4a621533c5199d27fd540e435bc8cd4fed02f20 Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 13:25:05 2019 +0200 - Fixes double variable initialization commit cb5dad5cae388504b1c754e81b3f16e26067b94b Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 13:22:36 2019 +0200 - Adds record permissions tests for Worklists #760 commit 41c9a3420b1fca1eac51641afbb520d95aada294 Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 11:11:56 2019 +0200 - Adds exception checks for instance permission checking #760 commit 40aa9ae10b2507647f3ec3873e7fd584be2579fb Author: Karel <karelgerbrands@gmail.com> Date: Mon Apr 1 09:41:54 2019 +0200 - Fixes incorrect super call #763 commit 99949e5660a6fdb47dba8733ea5141ba40318f42 Author: Karel <karelgerbrands@gmail.com> Date: Fri Mar 29 18:35:48 2019 +0100 - Removes debug code from views #760 commit 7f8b5094a7ec02d65b09c4a11e15700b289a8f64 Author: Karel <karelgerbrands@gmail.com> Date: Fri Mar 29 18:32:11 2019 +0100 - Statically assigns all required permissions for API tests #760 commit ae9e3859c2cba176da36918c2d7c1d053495495b Author: Karel <karelgerbrands@gmail.com> Date: Fri Mar 29 18:31:26 2019 +0100 - Fixes update forms showing a create rather than update button commit 9c5d89927efd3438afbf4710b0f1aa57c38e5d54 Author: Karel <karelgerbrands@gmail.com> Date: Fri Mar 29 17:56:24 2019 +0100 - Fixes incorrect variable initialization #760 commit 9556563c0f1df0e3ed5d9baffcfd8ff2c69d89b4 Author: Karel <karelgerbrands@gmail.com> Date: Fri Mar 29 17:50:09 2019 +0100 - Updates Migrations black formatting #760 commit 8619997fd60c839388bce56f714a44c403ca803c Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 28 15:21:56 2019 +0100 - Updates Querysets to filter based on access - Updates record specific actions to check for permission first - Adds a new entry to the settings, to allow customization of the Worklist access group name #757 commit 281dbcea20d8fa435cdec48db7f4b24a17e0c963 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 28 15:20:23 2019 +0100 - Adds group creation to the Worklist migrations #757 commit 5fee284ff567b6e9f6c2717e3bf3bd57a25830ce Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 28 15:20:04 2019 +0100 - Automatically adds new WorklistSet users to the worklist_access_group - Only allows users to view no user Worklists and Sets, but giving them full control over their own items #757 commit e8c0a9d05fde4365d4bfb9e8fecff6a025e115b5 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 28 13:21:07 2019 +0100 - Changes user acces for API views based on their permissions #757 commit e2d5ae6d405e1a90cfc8f08d59ec01fa7aed3a7b Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 28 13:19:12 2019 +0100 - Allows WorklistSets to now have a no-user entry - Sets user permissions on Set creation commit ff439f70ffe3455e25b4c28f13ed10066e95a588 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 26 16:28:29 2019 +0100 - Tests worklist set id acquisition #757 commit e57a30d960672ea120c095d8f1b7fb8f9b8237da Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 26 14:09:39 2019 +0100 - Fixes form rendering #757 commit ed2fdcc92a9cf9bb1d2613c5e60b796b86f0a045 Author: Karel <karelgerbrands@gmail.com> Date: Mon Mar 25 12:36:16 2019 +0100 - Adds list of permissions commit ec502436104098df23b31ba6e98197b25c5c6298 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 17:50:28 2019 +0100 - Adds permissions for Worklist model commit 6be08f5067b3487b6b7ab672ed9824b8a1297b8f Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 17:31:09 2019 +0100 - Removes debug code commit d85bccdba00e4f2a1a717c72ad01521083b2a562 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 15:51:33 2019 +0100 - Attemps manual deletion of duplicate objects commit e492a0c34a6e89058ff9c762a47830a52171bfa4 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 14:48:06 2019 +0100 - Adds debug code to see which entry isn't being removed commit ac92bc7a50743b04df0e8e3d675bd10b4e28fb2e Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 14:15:24 2019 +0100 - Adds a debug assertion commit 93717c3d667bdfac783d980dd5bd72f6ab685187 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 13:41:14 2019 +0100 - Adds assertion to check whether or not a table is empty before testing it commit e5ccd7f97e0302dd06f28644f2e123421ec9bf01 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 11:22:36 2019 +0100 - Ensures database contains no entries at the start of API testing commit e718d678d025c90b57472da565cf534e3698faa3 Author: Karel <karelgerbrands@gmail.com> Date: Thu Mar 21 10:44:23 2019 +0100 - Disables permissions to test delete error for Worklist Set commit a6291cca2aa728d9df2026bca4e6e897b86cf1ec Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 17:30:35 2019 +0100 - Gives every user full permissions to their own set commit 999b5644b74bc98d07f93ccb63ba3f051a82a35a Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 16:33:52 2019 +0100 - Ensures permissions are only set if an object was succesfully created commit 263aa1f5bfc8c5ab0d87fe9e47f7019834747c88 Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 15:40:53 2019 +0100 - Fixes formatting - Removes debug code commit 871ec39b2b49bd945ca16ad401ba3d43bef29f2e Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 14:58:13 2019 +0100 - Fixes meta model being called incorrectly commit af6ff2f3f6170a157196a8b307ff14fbaed5dabd Merge: 92a63b5e 14f466d6 Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 14:44:40 2019 +0100 Merge branch 'master' of https://github.com/comic/grand-challenge.org into pathology_support commit 92a63b5e59eb3b178c0fc2a6d70f45a798c077a4 Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 14:39:20 2019 +0100 - Fixes an issue where a record wouldn't always be deleted commit fece8e8a3ffe07de0e7827f0164621396c99ac2f Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 14:04:35 2019 +0100 - Fixes on save WorklistSet user acquisition commit 65c88f20094cf01c67c2cff4aa6058c145b70b5f Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 13:09:56 2019 +0100 - Updates migrations commit 8b281b08028e32fddd63b740648b1ce421c83b43 Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 20 10:59:55 2019 +0100 - Fixes user object acquisition for Worklist permissions commit 34ed9dc7a774af259c0576750c53197d0f84190c Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 19 17:14:01 2019 +0100 - Fixes a meta call commit 9456b8131da7eaed8271ebccee9f4f8326a3e79b Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 19 16:35:10 2019 +0100 - Fixes comments for Worklist permission tests - Adds debug code for API utils test commit 5fa77cd736d4e2bd28da04016a216eaab106e7b3 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 19 16:34:39 2019 +0100 - Adds permissions to Worklist and WorklistSet rows commit 2716d5758bb7775382422894664a772f4f083812 Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 13 11:19:35 2019 +0100 - Updates model - Adds return information to functions commit 57b23f845a8dc8a8bfaf1011104a5bbb07c683f4 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 17:50:35 2019 +0100 - Allows specific fields to be removed when a record is converted to a dict commit 5460449d8986e98d21c693be625ec46060c543a7 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 17:13:56 2019 +0100 - Fixes client being unable to utilize a json string directly commit df57dc6d6651df0ca4d03791e612658144a2c151 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 16:50:09 2019 +0100 - Ensures the duplicate record entry is deleted commit 2e0fbdafce34f90c147844087010c735304840cd Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 16:14:39 2019 +0100 - Fixes UUID to string conversion commit a2b26cd1738967ef0e9af627ad157d867ec42dc9 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 15:53:13 2019 +0100 - Correctly formats api_utils commit 0847b17f5ee465ef1c80793e072e78446da1b951 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 15:36:18 2019 +0100 - Attempts to fix UUID conversion commit 469cfd55ffd237edd1c1827b7fe4ef6e9f7e90f6 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 15:05:21 2019 +0100 - Implements serializers for model conversions in tests - Fixes uuid to string conversions commit d730836bccc6c9d688a6636baeed9be8f4b0c347 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 14:42:49 2019 +0100 - Attempts to fix model to JSON function commit 902b8e7db34570ccfa5d9ddbced28ad70dcef575 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 14:16:17 2019 +0100 - Fixes removal of non-existent field commit caf7a2c2bbc043c908e4b53c09b34a3e7e93f821 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 13:44:24 2019 +0100 - Attempts to fix model to json function commit e45f4f81b0aa7c2dc530dac64bc73705453c913c Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 12:09:46 2019 +0100 - Fixes a bug where the user field was checked incorrectly commit 6dabd073c1fb407c8ed5942232803e1c872fff2e Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 12:02:37 2019 +0100 - Attempts to fix tests commit 33ae69f0463ca87645fcb46c5880b6c753253a8d Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 11:29:34 2019 +0100 - Fixes the id not being converted to string for comparison commit e0a4e563673df7da66cd841016d13918e64d61c5 Author: Karel <karelgerbrands@gmail.com> Date: Tue Mar 12 11:13:02 2019 +0100 - Cleans api_util.py - Attempts to fix tests commit 6f99b1c5ee0b71d51da116ea9704ce47bbfb383a Author: Karel <karelgerbrands@gmail.com> Date: Mon Mar 11 17:35:15 2019 +0100 - Attempts to fix tests commit a3738ca6b1ccb89ec4fe34d857e145e8214a3e76 Author: Karel <karelgerbrands@gmail.com> Date: Mon Mar 11 17:17:42 2019 +0100 - Attempts to fix tests commit 786e3b21cf8b4390b0c5867c7d71acb614540bcb Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 6 13:03:16 2019 +0100 - Fixes migration formatting - Enables users to be defined for the Worklist Set creations and updates commit 6f9fee082a8dfbd06b166514c9ec721064bbaeeb Author: Karel <karelgerbrands@gmail.com> Date: Wed Mar 6 10:59:17 2019 +0100 - Fixes Worklist set creation and updates #695 commit 237092b9dde15c4d3918fc6f33c34eb5b32bc3f2 Author: Karel <karelgerbrands@gmail.com> Date: Mon Mar 4 14:20:08 2019 +0100 - Updates model queries to stop duplicates from appearing - Changes WorklistSet views to automatically set user information on creations and updates, based on the toekn - Changes WorklistSet to have a one to one field with user commit 0f1c3476e8d7601e20885add5c184b9b7e88c563 Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 28 13:00:47 2019 +0100 - Fixes a patient object being passed, rather than its primary key #695 commit 4f61cf950b92390d8d40250e670f1ff0f93e504f Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 28 12:41:50 2019 +0100 - Attempts to fix tests #695 commit da1da4700b02bc97e46c89e775ebbd1b7ade8be4 Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 28 11:40:14 2019 +0100 - Stops specific worklists and sets views from being utilized to pull worklists from other users - Attempts to fix tests failing on datetimes - Fixes incorrect worklist test names #695 commit 3d904c4f5e264ec85237524ac1e57bf280d7768f Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 28 11:11:19 2019 +0100 - Fixes incorrect method of allowing blank images fields for worklists #695 commit 0abc77532d874f50e426c7d6075e7053c8ecb0eb Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 28 10:42:57 2019 +0100 - Allows for worklists without any selected images - Attempts to fix the datetime being offered incorrectly #695 commit 31f2c68abcc61dd5c4a21087bcedf46828feb3bb Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 27 14:34:36 2019 +0100 - Fixes model id's being called, rather than pk #695 commit 32269bc0817c96de87709c727c6c643eefc1ab77 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 27 14:18:45 2019 +0100 - Fixes incorrect url calls in tests #695 commit a754d13df6e39c49949d196ad142e6719382c847 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 27 13:41:43 2019 +0100 - Fixes model name test - Fixes reverse calls with PK #695 commit c6ec93d9116723c8276d5858293d201ff4ead0ed Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 27 13:12:28 2019 +0100 - Fixes worklist list url's - Fixes tests #695 commit d8efd4bbbbc58971e2fcf73d81450c47cc65a4f5 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 27 11:07:49 2019 +0100 - Fixes tests #695 commit 077f73800e701aec025bd610d0885aa226c86011 Author: Karel <karelgerbrands@gmail.com> Date: Tue Feb 26 17:27:48 2019 +0100 - Fixes studies form import #695 commit bf3fad6a3948665b130909f9d46d18ac1e400702 Author: Karel <karelgerbrands@gmail.com> Date: Tue Feb 26 16:36:49 2019 +0100 - Fixes the datetime format #695 commit b160102f6c13c7058b39eb6668dc55e2339218db Author: Karel <karelgerbrands@gmail.com> Date: Mon Feb 25 23:56:33 2019 +0100 - Fixes test imports #695 commit 23194b6547ffce00321d5dcb666735e3bba1b4cb Author: Karel <karelgerbrands@gmail.com> Date: Mon Feb 25 13:15:17 2019 +0100 - Fixes API test calls - Fixes get_queryset not being recognized for the Image viewset #695 commit 919beee5720b9e77655a75f062a0139a008caa5a Author: Karel <karelgerbrands@gmail.com> Date: Mon Feb 25 11:32:56 2019 +0100 - Adds filters to the Image model #695 commit 36045bdbba07667b0d56b5755d7eddae596b51eb Author: Karel <karelgerbrands@gmail.com> Date: Mon Feb 25 10:35:17 2019 +0100 - Refines queries - Updates study name to reflect parent patient #695 commit 4f125ccf061bb2b94ad563906cd75832be9736cb Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 21 11:23:54 2019 +0100 - Fixes a bug where the tests still used the old api test call #695 commit 88f0efd2b70af111835639cdc6268aa53084fdf6 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 20 16:29:01 2019 +0100 - Attempts to fix tests - Adds additional checks for form views - Moves worklists factories into their own file #695 commit f86b5e93383f11436ac42e07da515402a0f6a9f1 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 20 10:26:10 2019 +0100 - Removes pathology app references - Moves Worklist factories into its own directory - Updates tests to reference correct factory files #695 commit 1bfbb3844716f09ae243b47578ec784d54bda317 Author: Karel <karelgerbrands@gmail.com> Date: Tue Feb 19 17:39:20 2019 +0100 - Updates API tests #695 commit 81bd5b59ef882ce4a80c0b0d36d2f75a871802a0 Author: Karel <karelgerbrands@gmail.com> Date: Tue Feb 19 16:31:14 2019 +0100 - Improves crispy forms usage - Updates all forms to reflect current models #695 commit 9abb223f501c513f2081e02506eb0dcded5e5170 Author: Karel <karelgerbrands@gmail.com> Date: Tue Feb 19 10:32:30 2019 +0100 - Adds filters to the Worklist, Patient and Study models #695 commit 8f2c66aaff428c5cd48fd3bc09ab1891c4f13313 Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 14 15:58:02 2019 +0100 #695 - Adds descriptions to Worklist models commit 24777001b8e0bb73d31eb01d89667e487fb48a1a Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 14 15:02:43 2019 +0100 #695 - Refines the selection of available images for worklists commit eb7db255a27e38407ba2d5e32b9fa18108e3079d Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 14 15:02:26 2019 +0100 #695 - Updates worklist forms - Updates migrations commit e4aefb29d303f977fa1460694c48707651185d5f Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 14 15:01:52 2019 +0100 #695 - Removes WorklistItem forms commit fa514a4175cbaa0a2f0ddc8c241e0149ab4dbe39 Author: Karel <karelgerbrands@gmail.com> Date: Thu Feb 14 11:10:31 2019 +0100 #695 - Removes the WorklistItem model from the worklists app - Implements a many to many field for the Worklist model commit e791e237625062a0bafba17bbebd713f61429458 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 13 17:33:23 2019 +0100 #695 - Fixes naming errors for the WorklistItems commit 4571e5d7a8f470079d975ecd49f5b8633365e8b0 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 13 17:33:01 2019 +0100 #695 - Updates the Worklist forms commit a1773d1549d9e72f8d306f0c650ce7bbc3fa1bfb Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 13 14:39:32 2019 +0100 #695 - Fixes form field references commit 2be34ecbdd7a7912ede9c4e37875f1662d904011 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 13 14:39:12 2019 +0100 #695 - Updates migrations - Fixes Worklist models - Adds worklists app to settings - Removes pathology app reference commit 8d2c8f97a9e579daf3440a921bd8c70c6a36843f Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 13 14:17:46 2019 +0100 #695 - Removes old serializers for Patients and Studies - Removes pathology app commit 28c8086805cc5022cc9799476e3259c11aa08e61 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 13 13:18:24 2019 +0100 #695 - Updates the worklist models to use the new tables commit 770e938236e56dc12e3775254cbd89af7966910e Merge: fcd0360a 6fe05970 Author: Karel <karelgerbrands@gmail.com> Date: Wed Feb 13 10:38:37 2019 +0100 Merge branch 'master' of https://github.com/comic/grand-challenge.org into pathology_support # Conflicts: # app/config/settings.py # app/grandchallenge/patients/migrations/0001_initial.py # app/grandchallenge/patients/models.py # app/grandchallenge/studies/migrations/0001_initial.py # app/grandchallenge/studies/models.py # app/tests/factories.py commit fcd0360ac6cab999c05bfd883d977984d64b4f78 Author: Karel <karelgerbrands@gmail.com> Date: Thu Jan 10 16:18:44 2019 +0100 - Fixes remove access still being tested under deletion - Fixes removal template still being listed as deletion commit 299177b0380bbacf14ec2f1d55af1cf42ba69a15 Author: Karel <karelgerbrands@gmail.com> Date: Thu Jan 10 15:57:37 2019 +0100 - Refactors tests to use updated CRUD names commit eebc4122e7e6579ed015e78edd9b0a2c0368d838 Author: Karel <karelgerbrands@gmail.com> Date: Thu Jan 10 15:39:19 2019 +0100 - Removes pathology tests for now, as these tables will be phased out in the future commit 234fca4dec4b05709274a665871c30ee210df36c Author: Karel <karelgerbrands@gmail.com> Date: Thu Jan 10 15:05:13 2019 +0100 - Cleans URL files commit dd4db636dc615e67de527dd24ffa5eb028e17603 Author: Karel <karelgerbrands@gmail.com> Date: Thu Jan 10 13:34:28 2019 +0100 - Black formatting and typo fix commit 39eb0ebc66ac9baf3145cf89696a428b12fb44ec Author: Karel <karelgerbrands@gmail.com> Date: Thu Jan 10 13:06:01 2019 +0100 - Fixes an incorrect field name in the WorklistItem serializer commit 4866e6ef5a0cb99a5af43ae7ea5ec0eedf5025aa Author: Karel <karelgerbrands@gmail.com> Date: Thu Jan 10 11:43:20 2019 +0100 - Fixes a mistake where the Django reverse is being imported, rather than from grand challenge commit c5c7df297eb35375f918973f479f967dda7a26d7 Author: Karel <karelgerbrands@gmail.com> Date: Wed Jan 9 17:31:24 2019 +0100 - Moves app urls to subdomains urls commit 08aecbe8d6506cfafb509b7555cbf9071658122d Author: Karel <karelgerbrands@gmail.com> Date: Wed Jan 9 17:06:14 2019 +0100 - Black formatting commit 99066d6cedd92b4d80ba269e95e7aa8ccb058f6a Author: Karel <karelgerbrands@gmail.com> Date: Wed Jan 9 15:45:49 2019 +0100 - Refactors URL's - Fixes typo's commit 3ce21afe248b3db9ad0b878b98fb3232519c3023 Author: Karel <karelgerbrands@gmail.com> Date: Wed Jan 9 11:33:45 2019 +0100 - Refactors reverse URL lookups commit 5e1b72f7c89e7bb5ddd812addf45f2fff29f02ad Author: Karel <karelgerbrands@gmail.com> Date: Tue Jan 8 15:57:17 2019 +0100 - Updats black formatting commit d743e3613b4a5b0cbd0c47c5d5d3c6f54bd7f3a7 Author: Karel <karelgerbrands@gmail.com> Date: Tue Jan 8 15:17:58 2019 +0100 - Fixes typo in the PatientItem factory commit 556d18fd615db86131e82dee2e1129e8cd68290d Author: Karel <karelgerbrands@gmail.com> Date: Tue Jan 8 14:58:25 2019 +0100 - Fixes reverse imports commit 0716096c036923da65678cd97633be7b4bd35896 Merge: f186fc79 fe3da5ea Author: Karel <karelgerbrands@gmail.com> Date: Tue Jan 8 11:18:03 2019 +0100 Merge branch 'master' of https://github.com/comic/grand-challenge.org into pathology_support commit f186fc79f1e542398a93ecc64029b29f82dc2570 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 29 17:54:03 2018 +0100 - Adds missing forms for patient items, study items and worklist items - Updates the patient item create / update form #627 commit 99691a67180a1f438066b1d8bc6de919c4f54d0d Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 29 17:53:07 2018 +0100 - Refreshes the migrations #627 commit 6f4f6b7a0c49e298c76146e0f8754bc998f4aa56 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 29 17:51:27 2018 +0100 - Fixes the model having a foreign key to study items, rather than study #627 commit 2131030e0bef9dccb6dca29eef87f13722d2920d Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 28 17:00:21 2018 +0100 - Rebuilds migrations - Fixes naming errors #627 commit 4e981fb64d289eb218ae33c775aebabc388e3bf1 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 28 16:34:48 2018 +0100 - Refactors the worklist forms/views/urls to be more explicit and in line with grand challenge #627 commit 90e36fce1e9ed2468cafcd22bfafc70f300d8d34 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 28 16:34:09 2018 +0100 - Refactors the studies forms/views/urls to be more explicit and in line with grand challenge #627 commit de4c8676936ed642a07c8afdc5eb54bf2c3c60aa Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 28 16:33:30 2018 +0100 - Changes template filenames for the patient app commit 1d6a0f6dd5724fb6f82e344280bb1d9b8200c5ac Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 28 16:27:07 2018 +0100 - Refactors the Patient views/forms/urls to be more explicit and in line with grand challenge commit 051804de8e997b012b98ed4b20e368c47c6431f3 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 28 16:26:36 2018 +0100 - Updates the pathology URLs to utilize id's for accessing the correct pages #627 commit 432c683fdafadb97f012465d18ed6d094e0761df Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 28 14:48:17 2018 +0100 - Adds all forms for the pathology app - Updates the url's - Organizes code a little #627 commit 174dbaabe2d679eed4d685cebabdbc604ad246d6 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 27 18:23:36 2018 +0100 - Adds an initial form, testing the multiselect fields #627 commit f0d16212e9e8d8fe0606a505edf3bfa7d81a8178 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 27 17:58:42 2018 +0100 - Reworks the pathology app model - Adds migrations #627 commit ae3712185c8aacd8004a3d3623160b7a5c00ecf0 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 27 16:52:53 2018 +0100 - Adds the pathology app to the settings - Fixes urls #570 commit 35b813df76eae0d66f257371f472f117902257f8 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 26 13:28:28 2018 +0100 - Adds API testing for the pathology app #626 commit d5128f09ef4f3fb07278aaae7a3992abcf05ac74 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 26 13:27:01 2018 +0100 - Reworks the Pathology model to utilize the Image model as the main coupling #570 commit 6af09066957a9a2cdcbf2d964c6f64d970b160cd Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 18:12:27 2018 +0100 - Fixes form issues for the worklists - Adds list form testing for the studies and worklists apps #570 #606 #607 #622 commit 38332cc517dad18b642d1174301ebe851f612776 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 18:11:17 2018 +0100 - Fixes code block styling - Adds to string conversions for the models that display the name / code / title alongside their UUIDs #570 commit 676131ea6d44f7e39f350a7e09f56f0c7c05f821 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 17:22:43 2018 +0100 - Fixes an error where no user was created for testing - Fixes an error where a table wasn't named correctly for testing #607 #622 commit 7a061a89f64e3bd3ef199a67138bc99bb1f686a8 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 16:42:59 2018 +0100 - Fixes a non-staff member accessing a staff member page during testing #607 commit 07ca59c488eaf8087a5c08f7dbfb2ba85a7dd0e4 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 16:42:25 2018 +0100 - Renames the worklist set forms - Updates the worklist app migrrations - Fixes an issue where a removed variable was being accessed #570 commit d50105c3a0369ed7a95fb17f912b88056065406d Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 15:31:14 2018 +0100 - Adds permission tests for the Worklists app #622 commit f499e82e1f72fa45c2afa1d40e97d8ea36022241 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 15:28:29 2018 +0100 - Fixes URLs - Adds all Worklist Forms - Updates form views to be staff only #570 #618 commit 7b6bb2966565a05d31b872e74bf13f59392f3ca9 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 22 11:42:27 2018 +0100 - Fixes study URL's being formatted incorrectly - Adds delete forms to the forms requiring a unique id - #606 #607 commit 9eb8672f2984a5fbff074f562124d66b448bf5fd Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 21 14:29:37 2018 +0100 - Adds factories for Worklist app - Adds API tests for Worklist app #622 commit afc756103c5790af712f22175f2e910ca7cdf868 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 21 14:28:55 2018 +0100 - Enables permission tests #606 #607 commit 84639b406269b656653051447476c493feb2ec11 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 21 12:20:37 2018 +0100 - Disables an unused import #606 commit 23063a211be757c1ab170a251cd86d90b64b9d00 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 21 11:59:47 2018 +0100 - Fixes import errors and incorrect form selection #570 commit 4439ea0051d07a49f39f265be4bc00aaed07b4da Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 21 10:34:27 2018 +0100 - Fixes an issue where the API update assertion failed to pass the content type #606 #607 commit 25bc28132f517bc6221cf0ea144df2ab07c745db Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 18:23:32 2018 +0100 - Adds permissions tests - Adds worklist tests #606 commit 964afa32299cc76195679c2f9e9a6853a09f2eb6 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 18:23:14 2018 +0100 - Adds cripsy forms #570 commit f86f946b29bc31a824f5d50a38b5d687f0ddd26c Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 17:54:53 2018 +0100 - Updates the HTTP method used for updating #606 #607 commit e2223d35155782f3b4fdbf554677bea1ecbee447 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 17:31:48 2018 +0100 - Fixes an issue where not all parameters were getting passed along #606 #607 commit 6058d2a4fb2ccae42c9756f576cb93ce3e7d0b60 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 17:11:23 2018 +0100 - Moves the API tests into its own utils file - Fixes an issue where the id was compared incorrectly - Adds API test for the studies #606 #607 commit a8235224bd2ca9dbadcf5cd4df77b1cdb3436fc3 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 16:54:29 2018 +0100 - Fixes incorrect HTTP status codes #607 commit fd698a42d311870dc50dad576d6ca503cda60e07 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 16:34:06 2018 +0100 - Speculative fix for json parsing #607 commit 241033cf4560441e4c2766327afdb9e3808a5943 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 16:14:52 2018 +0100 - Speculative fix for json parsing #607 commit 0aa570ca10c8da11b770d005d967a44ee44d0578 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 15:37:19 2018 +0100 - Speculative fix for json loading #607 commit e08abe964b73aff687d2f40348e1e0e69b1edd50 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 15:21:34 2018 +0100 - Speculative fix for json loading #607 commit dd5f304b0b07cbac265e56387494dbdee183d3f9 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 14:43:31 2018 +0100 - Speculative fix for json parsing #607 commit bc265e7a7e8f1b0813f5ac46785b8967fff9c634 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 14:25:40 2018 +0100 - Speculative fix for json parsing #607 commit c3d2f3c9321e5ef79b9d67b9391221674b98ba6a Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 13:32:28 2018 +0100 - Adds additional debug information #607 commit baa7ee67aee2fee3c449fb4c48dd26da4b0c0e10 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 20 13:02:07 2018 +0100 - Expands information for debugging purposes #607 commit 5d588c5cf9a020d321532029a86c1a29b08ad121 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 19 17:52:10 2018 +0100 - Fixes an issue where the dictionary changed during the iteration #607 commit 08649e30c9e1f7e91928669aed93d0a10c7660a2 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 19 17:34:34 2018 +0100 - Fixes issue where json values were incorrectly removed #607 commit 525cbec172bf9b8d9cec3cc5a3542726fdf7f9d6 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 19 16:12:18 2018 +0100 - Fixes a typo that caused required fields to be removed from a request - Removes a redundant deletion assertion #607 commit 0f4aa406e6fc12d19e7bd8255714987a93793aba Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 19 14:15:09 2018 +0100 - Speculative fix for filtering the json return object #607 commit 37e27506c92eb644a6169b7ff166a3b333ef64dc Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 19 14:14:09 2018 +0100 - Removes the detail form and replaces it with a crispy variant #618 commit cd526931d8e88e15d75bb115a9234674665eb9ae Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 16:46:42 2018 +0100 - Removes unused code - Adds additional comments #607 commit e28c9be5811b5ccf5cf97068a922e5fa6b504c85 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 16:28:54 2018 +0100 - Changes the status code to reflect the succes without content #607 commit fbe214efc5ed68c94f6cdd9202c7d74149f7a9ff Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 16:08:51 2018 +0100 - Speculative fix for redirect issue #607 commit 3fd16a9c773e5511b677f88a6b202d0dbc169e8c Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 15:29:46 2018 +0100 - Fixes an issue where a second deletion occurs, rather than a get #607 commit 91ae97a6addb859f924a0488f8879eda499d51bb Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 15:04:26 2018 +0100 - Fixes a typ #607 commit 16e967cc3efb2130674702aa66fe960bd1819e8f Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 15:02:31 2018 +0100 - Attempts to circumvent URL redirect issue on deletion #607 commit cdc5fec010b18622fcddba7c6f1e27d5702248f3 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 14:09:23 2018 +0100 - Speculative URL fix #607 commit ed606df92c20d09d994265577d873b85fe19e007 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 13:51:51 2018 +0100 - Speculative fix for url issues #607 commit 63c320c0cec6e8a93bc3a3257b35d165e349c002 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 13:32:13 2018 +0100 - speculative fix for uuid #607 commit 95e0ccb1a4641cf3f9edb4bdd180dd5861985bae Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 13:02:06 2018 +0100 - Speculative fix for UUID to string conversion #607 commit 3784e1219f2bad128edd6a3b607001a69ceec3fd Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 12:36:38 2018 +0100 - Speculative fix for UUID's not being converted to strings correctly #607 commit e716e540c12968c02b7671a9f6b1c2f12f69fe6d Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 12:02:59 2018 +0100 - Speculative fix for ID removal from json objects #607 commit 3c9e2c3b3ed0229159a5a174068ac9b23082517d Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 11:25:57 2018 +0100 - Fixes an issue where the form tries to expose an uneditable field #570 commit fc62024b83d55cd2beb7077a8152cf9dcdc1be3f Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 10:30:00 2018 +0100 - Adds crispy forms for patient updates and creates #570 commit 1695eece5dd0627e05ab646faca958b98f6f94e5 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 16 10:29:39 2018 +0100 - Fixes issue where records weren't passed in an array #607 commit c3b7ace54175d0be07ac3b37e15f96eecb81fa20 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 15 17:54:14 2018 +0100 - Fixes namespace typo #607 commit 5ef2391789708ec42010c611510b7d8803bfcbf5 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 15 17:45:09 2018 +0100 - Fixes parameterization error - Adds permission tests (disabled for now) #607 commit 19f06b72429949c0187a86b78c03cb31275fafff Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 15 17:35:32 2018 +0100 - Speculative json serializing fix #607 commit beb8fa1b83ded944c854d078152b68bd33e7a7e3 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 15 16:48:23 2018 +0100 - Fixes JSON creation #607 commit e633478948b263c7efd6d26e65ef63f5518c7971 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 15 16:07:08 2018 +0100 - Fixes a small url typo #607 commit fbc42caca96bdb3ac67746cc9d3c814c20ed93c2 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 15 15:47:47 2018 +0100 - Attempts to test API tables generically, initially on patients model #607 commit 040428331e6df9c8d3e53ea627661efaab46dee5 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 15 10:37:14 2018 +0100 - Updates the API tests to test access, insertion and deletion #607 commit 083b526c01fe584a8056580965436909553be02c Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 17:42:29 2018 +0100 - Adds incomplete tests that check patient table access and crud functionality #607 commit 97e9ba49ae509607225d5bba861fb6064e91bdbf Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 16:17:51 2018 +0100 - Disables record checking for testing #607 commit 7d10cd677ca1cd799bf1f08311650ab941cfe704 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 15:33:48 2018 +0100 - Removes unused dependency #607 commit d1f18e1c7d828644714c4cd32c674eb9fd7d8fec Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 15:24:05 2018 +0100 - Speculative fix for patient view tests - Adds API page access tests #607 commit ecb4c744f90366b0100ecc87ab8febaf648e9633 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 14:47:00 2018 +0100 - Speculative fix of list-view test #607 commit 151fe9779ef1b320dd6004a8388f588bedfb1890 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 12:50:26 2018 +0100 - Fixes the create urls for the patient and study list forms commit 83d0c51a605d6f4c05165d5c2fcaed7aff80b9ca Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 11:45:11 2018 +0100 - Fixes URL errors for patient and study templates commit 931f252f04edc1c9400208a2c2827db05465b1d5 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 14 11:09:15 2018 +0100 - Disables study tests for now - Adds a bare test for patient list views #606 #607 commit 0da2a69ecba1c73b3e9b5cd548891fd65ac59705 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 13 17:57:58 2018 +0100 - Updates the worklist migrations #591 commit 968d355e94214661cfa49014154d044d20b50988 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 13 17:14:46 2018 +0100 - Removes permission tests for now - Attempts to check the presence of UUID's on the list view test #606 #607 commit 74baf52d9c119ba52121011fe20cd9f883d00243 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 13 15:59:36 2018 +0100 - Updates the worklist model, removes any trace of a tree structure #591 commit 284eae1b5e674211b08f021ece400e617db76e15 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 13 12:26:34 2018 +0100 - Fixes method names #606 #607 commit 01f9186927056405fa22158e2ffa1006d07a618b Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 13 12:04:32 2018 +0100 - Fixes naming errors - Adds Study tests #606 #607 commit c3255ee458cf6e185bd95457f0ca6c32d29ba1c8 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 13 10:31:06 2018 +0100 - Renames file to remove typo #607 commit 5104f9f7b8f8dab26493306196429769b30fe52e Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 12 17:10:02 2018 +0100 - Adds initial tests for the Patients app #607 commit 7b5724b8e5e84d26433aa7f46619361859e80cb2 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 12 17:09:17 2018 +0100 - Updates patient url's to conform to grand-challenge standards commit 291dac8dbfba4e2dced9249c8450ee6f4a5caa6e Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 12 13:26:55 2018 +0100 - Adds factories for the Patients and Studies app #606 #607 commit 8b5a880dee9b67d8dcbffbc33421432c7a41c882 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 9 12:51:28 2018 +0100 - Updates the model migrations - Fixes a bug where the worklistset form wasn't interpreting the fields as a list - Removes unused dependencies #591 #592 commit f2b96469fc80bf938977e0094e58ffd1a374685b Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 9 12:43:55 2018 +0100 - Removes ID from the form list #593 commit 3528b68dd4689d85556664048ea02a15488ee352 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 9 12:39:13 2018 +0100 - Removes any trace of the django-filter module - Updates the pipfile.lock #595 commit 2807e95bc3d9183d0bc834802fea0edc833d3322 Merge: 7b236f81 d8772ad7 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 9 10:51:59 2018 +0100 Merge remote-tracking branch 'origin/master' into pathology_support # Conflicts: # Pipfile # Pipfile.lock # app/config/settings.py commit 7b236f815cad1c46aa3023300522a4d42cf67421 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 8 17:18:27 2018 +0100 - Reworks the Worklist model to reduce complexity, and the MPTT dependency #591 commit d94000a6fa1f531b5c4519ae7daf882927d9938e Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 8 16:20:56 2018 +0100 - Replaces reverse lazy with the grand-challenge reverse call #598 commit 7e4c63e196b785eedf9eebdf9120f85437ef620d Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 8 15:08:53 2018 +0100 - Reformats code with black - Reformats strings to quotes - Makes fields for serializers and forms explicit #590 #593 #594 commit b3c87398a9f500838a1b9c2b0fef4f11503a0d56 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 8 15:07:08 2018 +0100 - Reworks URL's to use UUID's #592 commit 1ce577c29dd883e204dbaee95e8f0124c7481e82 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 8 15:05:43 2018 +0100 - Removes the app.py files, due to serving no purpose commit 6c2b464ec6086ba5926de998a935f88a46ec4691 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 8 12:47:52 2018 +0100 - Refactors fields to be specific about what is exposed #590 commit b087f158e33c32946ffa8b73437c41df685a68f5 Author: Karel <karelgerbrands@gmail.com> Date: Wed Nov 7 11:18:13 2018 +0100 - Updates the models to utilize uuid's, rather than int as PK #592 commit 38e6d51cef33f0643f62a8b59808c8433933d498 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 17:21:49 2018 +0100 - Updates the migrations - Fixes a function call error in the getting started document #570 commit 324fd4d1616c122c7c293676e775e94408b558a5 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 17:11:34 2018 +0100 - Converts the Worklist table into a MPTT Model - Creates a linker table between Sets and Worklists #570 commit 3de214b1b2fc0528e02fba6910604b440164e75b Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 16:40:43 2018 +0100 - Adds mptt to the third party app list #570 commit 896e93b0cf01579cf7d12bed7f342bc9461df40a Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 16:16:57 2018 +0100 - Adds the mptt app as a dependency #570 commit ddf55722726378788b340f2f0cf3bf82bc23d4d1 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 16:16:39 2018 +0100 - Attempts to rework the model to manage its own tree structure #570 commit 2997ed4c782873d1f8fb4d41877f04e6cc696f97 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 16:16:03 2018 +0100 - Moves the worklist set forms to the correct directory #570 commit 9d35dc7058cac990bc9e3c25828092c789dc2272 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 12:37:19 2018 +0100 - Updates the worklist migrations #570 commit 1dc1284546fd61159f006df48e025fbf036ad3b4 Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 12:08:50 2018 +0100 - Adds new forms for the Worklist Set #570 commit 1233e0e09071240509895033ca400f2501a2e22e Author: Karel <karelgerbrands@gmail.com> Date: Tue Nov 6 12:08:29 2018 +0100 - Updates the worklist model #570 commit bee37fbbd31209e86ea3daf5228be9737596b2ef Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 5 14:03:04 2018 +0100 - Fixes template typo's #570 commit 53374fae7b1f43e64dac6926a5376ff36edfff77 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 5 13:46:53 2018 +0100 - Fixes an issue where meta was called instead of _meta while collecting model fields - Fixes an issue where redis wasn't installed through the locked pipfile #570 commit 281d2d308fb57fb0445d5dd61a08774e9cf1d759 Author: Karel <karelgerbrands@gmail.com> Date: Mon Nov 5 13:18:03 2018 +0100 - Updates the model migrations #570 commit f80cef91deacf28ac40a927aff31a4185abeee6b Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 2 13:27:31 2018 +0100 - Minor code cleaning - Adds id specific filtering to the Study table view #570 commit dd2914034ea6b0b41f5096d43e1024408d22eca4 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 2 13:22:09 2018 +0100 - Minor code cleaning #570 commit a0cb3a377b88bcc813bf0ddbf02eba32046629fc Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 2 13:10:31 2018 +0100 - Adds the Django-filter dependency #570 commit 935200cb82edd5ef9db7de6c150ca667728c2506 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 2 13:04:53 2018 +0100 - Cleans some code - Fixes migrations #570 commit b379a5fc7c42dc2553feb9719de6826a833076e4 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 2 11:39:22 2018 +0100 - Fixes url typo #570 commit 491648667f27623936381501d3417e00519f3145 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 2 11:35:26 2018 +0100 - Updates and fixes the study table forms #570 commit cd2045c43ecca20786b6e6da180f188b26b94e70 Author: Karel <karelgerbrands@gmail.com> Date: Fri Nov 2 11:34:58 2018 +0100 - Cleans up some Patient model code - Improves Patient deletion form #570 commit 67dc13db3743e08cf6679c8cea9177d3d249e674 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 1 18:07:06 2018 +0100 - Adds a link towards the patient creation page #570 commit 7bc91600ea72479eaeca6f547cf47c3b8b3ff7f8 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 1 17:56:18 2018 +0100 - Adds some basic styling to the Patient table #570 commit 04fb661babcafa27ef153f9d7be33ef085456ee6 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 1 17:52:25 2018 +0100 - Fixes the Patient List display - Adds a get_fields function to the Patient model, allowing dynamic rendering on the listview - Adds cancel buttons for update and delete views, returning them back to the list #570 commit 37b3e9370150ad8b6d2d9b512138621263e7ca72 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 1 17:09:26 2018 +0100 - Adds initial version of a listview for the patient table #570 commit ce27e68b9991820b5adf7b2ffaa43fec4e4b5acd Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 1 16:17:09 2018 +0100 - Fixes the patient CRU forms and redirects them to the API list for now #570 commit f08f69a713181554a6c224599e345cab23745607 Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 1 15:24:37 2018 +0100 - Attempts to fix Patient app urls - Adds more detail to deletion template #570 commit bb6cdcfb534a2444bcfebe10df4eba09fd0e108f Author: Karel <karelgerbrands@gmail.com> Date: Thu Nov 1 14:16:24 2018 +0100 - Attempts to fix Patient forms #570 commit a28ac3e978eec08b57f4bdd1d7f0f1dc94383d77 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 31 17:51:00 2018 +0100 - Attempts to implement the Patient Creation form in an alternative manner #570 commit 90354839033654d3829cbd22b505963dc39e6b6f Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 31 17:25:12 2018 +0100 - Moves the patient and study templates into the correct folder - Attempts to fix the CreatePatient form from redirecting towards the correct page #570 commit a9dd2221ce2017568e3dbc62e5f8133480171c44 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 31 15:03:06 2018 +0100 - Fixes an import issue for the authtoken views #570 commit 935fb9b81bab7c403c5d6eb6cf221b067553a743 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 31 13:59:14 2018 +0100 - Moves rest API url's back into the api app #570 commit 1e98a5e3d3586a7d715528d24bc5b99270678466 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 31 13:08:09 2018 +0100 - Fixes path towards token view commit 4b3ae833becda7cbc8e1373c5d7b4d593b2f679b Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 31 13:02:08 2018 +0100 - Attempts to enable token acquisition through the API #570 commit 6d171ea2da6e8975dcab66fa756480ef1098f842 Author: Karel <karelgerbrands@gmail.com> Date: Tue Oct 30 16:13:27 2018 +0100 - Moves the rest_framework urls import to the config/urls file, as it caused namespace issues being located within the /api/ app commit ca64588011bc9119dbc6511d24728c07262a2782 Author: Karel <karelgerbrands@gmail.com> Date: Tue Oct 30 14:33:33 2018 +0100 - Fixes url issues, caused by the renaming of group to WorklistGroup #570 commit 61e5056bf1810e2ad16355cd8c61145ed4e67958 Author: Karel <karelgerbrands@gmail.com> Date: Tue Oct 30 14:26:43 2018 +0100 - Fixes issues caused by the renaming of Group to WorklistGroup #570 commit 9ee3a85d3beb0b0b6dcd5fd745f207ca538f4bb7 Author: Karel <karelgerbrands@gmail.com> Date: Tue Oct 30 14:13:42 2018 +0100 - Removes csrf exempt tags - Converts field lists to '__all__' tags instead #570 commit 5510d20ff62162aff847135124d865f6ded6a9cd Author: Karel <karelgerbrands@gmail.com> Date: Tue Oct 30 14:13:09 2018 +0100 - Moves the create / update html templates to the /template directories #570 commit e8dca721ada6f3b5a84952b378aa3bcb23fbc886 Author: Karel <karelgerbrands@gmail.com> Date: Tue Oct 30 14:12:22 2018 +0100 - Adds a new app with pathology specific models #570 commit 56476ea01069738738e26aac59c26850524348b1 Author: Karel <karelgerbrands@gmail.com> Date: Mon Oct 29 16:16:19 2018 +0100 - Implements forms for the Worklists and Studies apps - Adds csrf_exempt decorators to API calls - Changes the patients forms to use all __all__, rather than a list of fields #570 commit 8130086e954848256cb0057025c5c010368fb030 Author: Karel <karelgerbrands@gmail.com> Date: Mon Oct 29 15:35:11 2018 +0100 - Adds grand-challenge elements to the Patient form #570 commit f8f129761211e21d4553fcda79890fcdb932dfb7 Author: Karel <karelgerbrands@gmail.com> Date: Mon Oct 29 13:00:17 2018 +0100 - Fixes and adds a simple patient form - Updates update view to acquire all fields #570 commit eef3f8a7a296a03b3384f82a0dc07ae834c37738 Author: Karel <karelgerbrands@gmail.com> Date: Fri Oct 26 17:28:05 2018 +0200 - Adds views for the patient forms - Updates URL's to access patient forms - Adds patient create / update form template #570 commit 78706cf08c843f597a0d68afd86a2219ef7747fa Merge: bfb8aabf 11ae73b2 Author: Karel <karelgerbrands@gmail.com> Date: Fri Oct 26 15:03:52 2018 +0200 Merge branch 'master' of https://github.com/comic/grand-challenge.org into pathology_support commit bfb8aabf9c1b9a6b6dcd370fa500308b6d5e8f11 Author: Karel <karelgerbrands@gmail.com> Date: Fri Oct 26 14:48:03 2018 +0200 - Updates the getting started documentation with Windows specific steps commit 9ed9b01d21330bc8f28b5594881808dd03bbc877 Author: Karel <karelgerbrands@gmail.com> Date: Fri Oct 26 12:37:49 2018 +0200 - Fixes small bug in Worklists migration #570 commit a2f6f91f66991237eb7e3ef81ea215427c9b994a Author: Karel <karelgerbrands@gmail.com> Date: Fri Oct 26 12:31:23 2018 +0200 - Speculative fix for Worklist migrations #570 commit a26408f0062629b10dbb3a84c77b36b4e17cb677 Author: Karel <karelgerbrands@gmail.com> Date: Fri Oct 26 12:30:57 2018 +0200 - Fixes Worklist app models creation - Fixes Worklist app URL pathing #570 commit 872be1b436dbfa3fdabb9fc272c5f2861f26484b Author: Karel <karelgerbrands@gmail.com> Date: Fri Oct 26 10:54:49 2018 +0200 - Refactors Worklist models to have an additional Groups table, rather than a trunk foreign key - Fixes namespace bug #570 commit bf562597da751a2116cc198e9821136180411229 Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 18:12:21 2018 +0200 - Adds a basic form for the Patients app - Adds the worklists app to the settings file #570 commit 163315a8f849eb8c5ad8bb9c136fad56732555a4 Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 17:45:36 2018 +0200 - Fixes a bug where the studies URL was using the wrong namespace #570 commit 6fbf25d888c16dee7772808840f2d26a9f290451 Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 17:31:26 2018 +0200 - Removes worklists relations - Adds a trunk to a worklist, that always points to the initial node in the tree #570 commit f4217c9ed1d07bfe4e597e210bcf82104b230a06 Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 16:26:32 2018 +0200 - Fixes django-filters import - Shapes the app URL's to adhere to: api/{app name} - Refactors worklists namespaces #570 commit 101b936f904275d89274cc344a177cad934352b0 Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 15:36:51 2018 +0200 - Adds the correct django-filter dependency #570 commit d795a2b2bbe53f4ebfab1d9d4e8433a481dd440f Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 14:52:20 2018 +0200 - Attempts to import the django-filters module - Fixes imports for de studies serializer #570 commit 4c5211a674f8e121d99a394b952f83dc9032d21b Merge: 6c9fd16c 3c4b943f Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 10:18:23 2018 +0200 Merge branch 'pathology_support' of https://github.com/comic/grand-challenge.org into pathology_support commit 6c9fd16c4750926338617d229b17f4481c8a8adb Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 10:14:32 2018 +0200 - Adds the skeleton for the Worklists app #570 commit 7032ce86622a4a9e0d7775728522933ad0d91b2b Author: Karel <karelgerbrands@gmail.com> Date: Thu Oct 25 10:09:32 2018 +0200 - Adds the django-filters module as dependency #570 commit 5424133dd03c659cd71649d9b3704683ade4e675 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 24 15:42:54 2018 +0200 - Speculative fix for regex paths #570 commit 1051a52f9e7a39eae55cdd8ecedd61b9503eade5 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 24 15:38:07 2018 +0200 - Speculative fix for url routing #570 commit 218c3afcd3594bc2c97d86266194ef088fea4327 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 24 14:45:32 2018 +0200 - Adds apps to the settings file - Rework url files in an attempt to access new api tables #570 commit 323169db3156a77c54478aec742657d53d46110a Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 24 14:35:27 2018 +0200 - Fixes the URL app name to the correct format #570 commit 5100c3f7d605f6c08b11f6a3eac4d033e4d5d913 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 24 14:20:45 2018 +0200 - Adds migrations for the two models #570 commit 03b12ec4f1accd346e8932fc687ca935c370fef9 Author: Karel <karelgerbrands@gmail.com> Date: Wed Oct 24 12:56:15 2018 +0200 - Pushes the initial Patient and Study models for testing #570

codecov · 2019-04-08T11:54:11Z

Codecov Report

Merging #784 into master will increase coverage by 0.01%.
The diff coverage is 96.29%.

@@            Coverage Diff             @@
##           master     #784      +/-   ##
==========================================
+ Coverage   92.67%   92.68%   +0.01%     
==========================================
  Files         349      376      +27     
  Lines       12074    12618     +544     
==========================================
+ Hits        11189    11695     +506     
- Misses        885      923      +38

Impacted Files	Coverage Δ
app/config/urls.py	`88.23% <ø> (ø)`	⬆️
app/config/settings.py	`94.96% <ø> (ø)`	⬆️
app/grandchallenge/studies/models.py	`100% <100%> (ø)`	⬆️
app/grandchallenge/studies/urls.py	`100% <100%> (ø)`
app/grandchallenge/studies/views_forms.py	`100% <100%> (ø)`
app/tests/worklists_tests/test_api.py	`100% <100%> (ø)`
app/grandchallenge/studies/forms.py	`100% <100%> (ø)`
app/grandchallenge/cases/views.py	`100% <100%> (ø)`	⬆️
app/tests/patients_tests/test_permissions.py	`100% <100%> (ø)`
app/grandchallenge/patients/views_api.py	`100% <100%> (ø)`
... and 53 more

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 87954a7...b69c79a. Read the comment docs.

app/grandchallenge/api/urls.py

app/grandchallenge/patients/templates/patients/patient_display_form.html

app/grandchallenge/patients/templates/patients/patient_remove_form.html

app/grandchallenge/patients/urls.py

app/grandchallenge/studies/forms.py

#787

- Adds detail view for Patient forms - Refactors patient api view into readonly viewset #787

#787

…termined once a custom queryset method has been defined #787

#787

- Renames study delete template #788 #789

#788

#787

#788

- Updates study url's #788

#788

- Updates migrations - Removes group definition from settings #789

#789

- Refactors the form urls #789

- Fixes several tests

codecov-io · 2019-05-13T15:05:05Z

Codecov Report

Merging #784 into master will increase coverage by 0.06%.
The diff coverage is 97.39%.

@@            Coverage Diff             @@
##           master     #784      +/-   ##
==========================================
+ Coverage   93.47%   93.53%   +0.06%     
==========================================
  Files         352      363      +11     
  Lines       12023    12206     +183     
==========================================
+ Hits        11238    11417     +179     
- Misses        785      789       +4

Impacted Files	Coverage Δ
app/grandchallenge/cases/image_builders/tiff.py	`93.1% <ø> (ø)`	⬆️
app/config/settings.py	`95% <ø> (ø)`	⬆️
app/grandchallenge/core/utils/query.py	`80% <ø> (ø)`	⬆️
app/grandchallenge/studies/models.py	`100% <100%> (ø)`	⬆️
app/grandchallenge/api/urls.py	`100% <100%> (ø)`	⬆️
app/tests/cases_tests/test_tiff.py	`100% <100%> (ø)`	⬆️
app/tests/worklists_tests/test_api.py	`100% <100%> (ø)`
app/grandchallenge/studies/serializers.py	`100% <100%> (ø)`	⬆️
app/grandchallenge/cases/views.py	`100% <100%> (ø)`	⬆️
app/tests/patients_tests/test_api.py	`100% <100%> (ø)`
... and 22 more

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 50ad9ae...e19e38c. Read the comment docs.

- Adds black formatting

- Fixes the WorklistViewSet create function

- Updates TIFF tests to assert depth as 1 rather than none

…into pathology_support_review # Conflicts: # app/config/urls.py

Karelger added 4 commits April 8, 2019 13:39

Use f-strings

28f841b

Merge the patient forms

2c2bd1f

Removes unused elements

ff4c520

jmsmkn and others added 2 commits April 8, 2019 14:12

Refactors patient templates

738a9b1

Adds a datetime widget

37173cf

jmsmkn commented Apr 8, 2019

View reviewed changes

jmsmkn mentioned this pull request Apr 8, 2019

Pathology support #775

Closed

Karelger added 21 commits April 9, 2019 17:58

- Updates block titles to include super

156ad32

#787

- Fixes template URL's

3ed1e17

#787

- Adds queryset filter methods

9e1e065

#787

- Seperates API from Form views

76137ef

- Adds detail view for Patient forms - Refactors patient api view into readonly viewset #787

- Updates urls

cd1082d

#787

- Adds basename for Patient API url, as it cannot be automatically de…

30ce8ea

…termined once a custom queryset method has been defined #787

- Fixes queryset filter functions

2d8f6e1

#787

- Removes worklist set templates

79dcfbe

- Renames study delete template #788 #789

- Fixes study forms

9fd16ae

#788

- Fixes patient form title

bee7db7

#787

- Splits studies views into API and Form specific

064dacf

#788

- Updates study forms

24efc23

- Updates study url's #788

- removes old study views

ef3f143

#788

- Updates worklist model

5135001

- Updates migrations - Removes group definition from settings #789

- Unifies the forms

4c87a58

#789

- updates the views

5d10e06

#789

- Updates the worklist serializer

67499e7

#789

- Refactors the worklist templates

737fc02

#789

- Refactors the api urls

add87ae

- Refactors the form urls #789

- Fixes several tests

b26568c

- Updates black formatting

3b831ca

- Fixes several tests

Karelger added 20 commits May 14, 2019 17:54

- Adds the ability to set a models user field within API tests

a34b78d

- Improves factory kwarg passing

8ed792e

- Updates black formatting

ec24bf3

- Fixes kwarg initialization

ba363c4

- Ensures the user field key is set correctly

05e2258

- Fixes the serializer

c0e2f5c

- Updates worklist templates

48d4255

- Cleans up argument passing

0d7e87e

- Fixes the record to dict function not utilizing the additional kwargs

1828c7b

- Fixes the creator field being removed from the serialized worklist

b109985

- Fixes the worklists ability to handle empty lists

82118e3

- Speculative fix for ManyToMany field initialization

2f0aaa5

- Cleans code

798aae3

- Adds black formatting

- Adds a more elegant method to store the worklist many to many field

017482f

- Fixes the incorrect evocation of the images field.

cdacaae

- Removes the split being performed on a queryset

e3d8acd

- Sets standard fields on the TIFF image creation

2528330

- Fixes the WorklistViewSet create function

- Updates formatting

9d3b6cc

- Updates TIFF tests to assert depth as 1 rather than none

Merge branch 'master' of https://github.com/comic/grand-challenge.org …

984c08e

…into pathology_support_review # Conflicts: # app/config/urls.py

- Updates formatting

a41bc35

jmsmkn assigned jmsmkn and unassigned Karelger May 27, 2019

jmsmkn added 4 commits June 4, 2019 11:25

Merge branch 'master' into pathology_support_review

a35da0d

Corrects comparison

db25cc3

Corrects test logic

2923c02

Removes template views

e19e38c

jmsmkn changed the title ~~Pathology Support~~ Add worklists Jun 4, 2019

jmsmkn merged commit 78204fe into master Jun 4, 2019

jmsmkn deleted the pathology_support_review branch June 4, 2019 10:53

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Add worklists #784

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