3.1.20231206180100

What's Changed

• --no-warnings for even quieter output (errors only) by @mr-c in #1885
• pathmapper: don't use temporary lists by @mr-c in #1949
  • a toil-cwl-runner user with many inputs of large "measurement set" directories had reported many hours to process stage_files and now reports that this PR reduces that to several minutes!
• run the CWL v1.2.1 conformance tests by @mr-c in #1942
• add support for dockerFile with --singularity by @misterbrandonwalker in #1938
• fix compute_checksums during cache check for input File with literal default by @mr-c in #1776
• make running the conformance test more flexible by @mr-c in #1911

Misc

• remove last usage of pkg_resources by @mr-c in #1945
• Drop "Atomic" types in favor of recursive typedefs by @mr-c in #1943

Deps

• Bump mypy from 1.6.1 to 1.7.1 by @dependabot in #1940
• Bump sphinx-rtd-theme from 1.3.0 to 2.0.0 by @dependabot in #1948
• Update flake8-bugbear requirement from <23.10 to <23.12 by @dependabot in #1947
• Update flake8-bugbear requirement from <23.12 to <23.13 by @dependabot in #1950

New Contributors

• @misterbrandonwalker made their first contribution in #1938

Full Changelog: 3.1.20231114134824...3.1.20231206180100