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LDpred2
: LD estimation with physical position instead of genetic distance
enhancement
#257
opened Apr 25, 2024 by
deepchocolate
LDpred2
: Crash with characters and integers in chromosome column
bug
#255
opened Apr 23, 2024 by
espenhgn
improve compatibility w. singularity sandbox mode
bug
Something isn't working
no-issue-activity
#225
opened Feb 7, 2024 by
espenhgn
misc. improvements
enhancement
New feature or request
no-issue-activity
#221
opened Feb 2, 2024 by
espenhgn
2 of 6 tasks
Option to get marker, effect allele and beta in the output
no-issue-activity
#217
opened Jan 5, 2024 by
Mahantesh-Biradar
Add PRS-CS deps
enhancement
New feature or request
no-issue-activity
#215
opened Dec 13, 2023 by
espenhgn
LDpred2
: strategy for per-chromosome resolved PLINK .bed files?
enhancement
#210
opened Nov 15, 2023 by
espenhgn
Fix myst cross-reference warnings. Also fix TOC.
documentation
Improvements or additions to documentation
no-issue-activity
#206
opened Oct 17, 2023 by
espenhgn
Apptainer rootless builds?
enhancement
New feature or request
no-issue-activity
#201
opened Sep 25, 2023 by
espenhgn
gwas.py gwas
crashes with a KeyError: 0
trying to rename the IID column
bug
#163
opened Apr 28, 2023 by
rzetterberg
LDpred2: Add unit test for choice of reference alleles
no-issue-activity
#147
opened Mar 6, 2023 by
espenhgn
Sumstats: Join up chromosome and position
no-issue-activity
#137
opened Feb 21, 2023 by
deepchocolate
tests/test_saige.py::test_saige_SAIGE()
function is missing files
bug
#110
opened Dec 13, 2022 by
espenhgn
gwas.py
: Include BOLT-LMM
in pipeline
enhancement
#95
opened Nov 22, 2022 by
espenhgn
set New feature or request
no-issue-activity
#SBATCH --error/--output
flags in gwas.py
enhancement
#80
opened Nov 4, 2022 by
espenhgn
gwas.sif: Compile GCTB (SBayesR) with MPI bindings.
enhancement
New feature or request
no-issue-activity
#75
opened Oct 25, 2022 by
espenhgn
~/.bashrc
or ~/.bash_profile
for env variables used in CoMorMent demos?
no-issue-activity
#70
opened Oct 13, 2022 by
ofrei
Include KING tutorial dataset in repo
enhancement
New feature or request
no-issue-activity
#69
opened Oct 12, 2022 by
espenhgn
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