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Thanks very much for making this script of LDpred2. However, I got the following error, which I didn't see before. Do you have any idea about what was going on?
Error: Tested 1047164 < 1047164. Subscript out of bounds.
I believe this happened when it ran through this code: ind.row <- rows_along(G)
Do I need to change the bound limit or reduce the size of my genotype file? And 1047164 < 1047164 this sentence makes no idea to me.
😊
The text was updated successfully, but these errors were encountered:
I first used the full script from your page, but I had some problems with the Loading LD reference and with running calculateLD.R. So I copied the part about calculating the LD matrix from Florian's page (The part on Correlation) and got the error above.
About calculateLD.R, I got the error saying --file-ld-blocks is not a defined optional argument or flag.
Hi @KirakiraZLY,
The calculateLD.R script found here is based on material from Florian, but not provided by him.
Please refer to the documentation found here.
Hi,
Thanks very much for making this script of LDpred2. However, I got the following error, which I didn't see before. Do you have any idea about what was going on?
I believe this happened when it ran through this code:
ind.row <- rows_along(G)
Do I need to change the bound limit or reduce the size of my genotype file? And 1047164 < 1047164 this sentence makes no idea to me.
😊
The text was updated successfully, but these errors were encountered: