updated uniq to write to a tmp file first

compgen-io · Apr 16, 2015 · 3f9a6b8 · 3f9a6b8
1 parent 54c4fc7
commit 3f9a6b8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/rnaseq/star b/rnaseq/star
@@ -281,7 +281,7 @@ endif
         job.name = "bam-uniq"
         job.stack="10M"
     %>
-    ngsutilsj bam-filter --unique-mapping $< $>
+    ngsutilsj bam-filter --unique-mapping $< $>.tmp && mv $>.tmp $>
 
 %.counts.txt: %.bam %.bam.bai
     <%