Merge branch 'master' of https://github.com/compmetagen/micca

compmetagen · May 28, 2019 · e22f73a · e22f73a
2 parents 25e95d8 + 8552cfc
commit e22f73a
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diff --git a/doc/source/install.rst b/doc/source/install.rst
@@ -192,7 +192,7 @@ used in the :doc:`/commands/classify` command (option ``-m/--method rdp``).
 
    Only RDP Classifier version >2.8 is supported. Install the standard Java or
    Java compatible runtime (``sudo apt-get install default-jre`` in
-   Ubuntu/Debian or go to the `Oracle Java homepage <www.java.com>`_ for OS X)
+   Ubuntu/Debian or go to the `Oracle Java homepage <https://www.java.com>`_ for OS X)
 
 Download and unzip the file (RDP classifier 2.11 2015-09-14):
 

diff --git a/doc/source/pairedend_97.rst b/doc/source/pairedend_97.rst
@@ -25,7 +25,7 @@ gene/spacers, e.g. **Internal Transcribed Spacer (ITS)**, **18S** or **28S**.
 Dataset download
 ----------------
 
-The following paired-end 16S rRNA dataset contains **34 samples** from  in FASTQ
+The following paired-end 16S rRNA dataset contains **34 samples** in FASTQ
 format (V3-V4 region, 341F 5'-CCTACGGGNGGCWGCAG-3', 806Rmod
 5'-GACTACNVGGGTWTCTAATCC-3').
 
@@ -162,7 +162,7 @@ In this case (overlapping paired paired-end reads) we are interested in the plot
 on top (minimum length filtering only). A minimum read length (L) of **400** and a
 maximum error rate of **0.75%** seems to be a good compromise between the
 expected error rate and the number of reads remaining. Inspecting the file
-``filterstats/minlen_stats.txt``, you can see that more than **85%** reads will
+``filterstats/filterstats_minlen.txt``, you can see that more than **85%** reads will
 pass the filter::
 
     L   0.25    0.5     0.75    1.0     1.25    1.5