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Davide Albanese committed Feb 27, 2017
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Expand Up @@ -9,9 +9,8 @@ processing of amplicon sequencing data, **from raw sequences** to
**OTU tables**, **taxonomy classification** and **phylogenetic tree**
inference. The pipeline can be applied to a range of highly conserved
genes/spacers, such as **16S rRNA gene**, **Internal Transcribed
Spacer (ITS)** and **28S rRNA**.

micca is an open-source, GPLv3-licensed software.
Spacer (ITS)** and **28S rRNA**. micca is an open-source, GPLv3-licensed
software.

* `Homepage <http://micca.org/>`_
* `Documentation (latest) <http://micca.org/docs/latest>`_
Expand Down Expand Up @@ -40,12 +39,10 @@ Docker images are available (compmetagen/micca) starting from version 1.2.2,
see the documentation (>=1.3.0) to learn how to use them. `Docker hub page:
<https://hub.docker.com/r/compmetagen/micca/>`_.

Citing micca:

Davide Albanese, Paolo Fontana, Carlotta De Filippo, Duccio Cavalieri
and Claudio Donati. **MICCA: a complete and accurate software for
taxonomic profiling of metagenomic data**. Scientific Reports 5,
Article number: 9743 (2015), doi:10.1038/srep09743, `Link
**How to cite**: Davide Albanese, Paolo Fontana, Carlotta De Filippo, Duccio
Cavalieri and Claudio Donati. **MICCA: a complete and accurate software for
taxonomic profiling of metagenomic data**. Scientific Reports 5, Article number:
9743 (2015), doi:10.1038/srep09743, `Link
<http://www.nature.com/articles/srep09743/>`_. Dataset download:
ftp://ftp.fmach.it/metagenomics/micca/scirep/.

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