Rebuild for Python 3.7, GCC 7, R 3.5.1, openBLAS 0.3.2 #2

regro-cf-autotick-bot · 2018-10-08T03:56:53Z

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conda-forge-linter · 2018-10-08T03:56:57Z

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

jakirkham · 2018-10-11T20:07:38Z

Here's the Linux failure with the new compilers.

/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib -o memcheck-amd64-linux -m64 -O2 -g -std=gnu99 -Wall -Wmissing-prototypes -Wshadow -Wpointer-arith -Wstrict-prototypes -Wmissing-declarations -Wcast-align -Wcast-qual -Wwrite-strings -Wempty-body -Wformat -Wformat-security -Wignored-qualifiers -Wmissing-parameter-type -Wold-style-declaration -fno-stack-protector -fno-strict-aliasing -fno-builtin  -fomit-frame-pointer -O2 -static -nodefaultlibs -nostartfiles -u _start  -m64 memcheck_amd64_linux-mc_leakcheck.o memcheck_amd64_linux-mc_malloc_wrappers.o memcheck_amd64_linux-mc_main.o memcheck_amd64_linux-mc_translate.o memcheck_amd64_linux-mc_machine.o memcheck_amd64_linux-mc_errors.o ../coregrind/libcoregrind-amd64-linux.a ../VEX/libvex-amd64-linux.a -lgcc 
/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/_build_env/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: ../coregrind/libcoregrind-amd64-linux.a(libcoregrind_amd64_linux_a-m_mallocfree.o): in function `reclaimSuperblock':
/usr/local/src/conda/valgrind-3.13.0/coregrind/m_mallocfree.c:953: undefined reference to `__stack_chk_fail'
/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/_build_env/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: ../coregrind/libcoregrind-amd64-linux.a(libcoregrind_amd64_linux_a-m_mallocfree.o): in function `vgPlain_arena_realloc_shrink':
/usr/local/src/conda/valgrind-3.13.0/coregrind/m_mallocfree.c:2579: undefined reference to `__stack_chk_fail'
/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/_build_env/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: ../coregrind/libcoregrind-amd64-linux.a(libcoregrind_amd64_linux_a-debuginfo.o): in function `format_message':
/usr/local/src/conda/valgrind-3.13.0/coregrind/m_debuginfo/debuginfo.c:3544: undefined reference to `__stack_chk_fail'
/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/_build_env/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: ../coregrind/libcoregrind-amd64-linux.a(libcoregrind_amd64_linux_a-debuginfo.o): in function `consider_vars_in_frame':
/usr/local/src/conda/valgrind-3.13.0/coregrind/m_debuginfo/debuginfo.c:3672: undefined reference to `__stack_chk_fail'
/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/_build_env/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: ../coregrind/libcoregrind-amd64-linux.a(libcoregrind_amd64_linux_a-debuginfo.o): in function `putStrEsc':
/usr/local/src/conda/valgrind-3.13.0/coregrind/m_debuginfo/debuginfo.c:2255: undefined reference to `__stack_chk_fail'
/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/_build_env/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: ../coregrind/libcoregrind-amd64-linux.a(libcoregrind_amd64_linux_a-debuginfo.o):/usr/local/src/conda/valgrind-3.13.0/coregrind/m_debuginfo/debuginfo.c:1070: more undefined references to `__stack_chk_fail' follow
collect2: error: ld returned 1 exit status
make[3]: *** [memcheck-amd64-linux] Error 1
make[3]: Leaving directory `/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/work/memcheck'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/work/memcheck'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/work'
make: *** [all] Error 2
Traceback (most recent call last):
  File "/opt/conda/bin/conda-build", line 11, in <module>
    sys.exit(main())
  File "/opt/conda/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 439, in main
    execute(sys.argv[1:])
  File "/opt/conda/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 430, in execute
    verify=args.verify, variants=args.variants)
  File "/opt/conda/lib/python3.6/site-packages/conda_build/api.py", line 201, in build
    notest=notest, need_source_download=need_source_download, variants=variants)
  File "/opt/conda/lib/python3.6/site-packages/conda_build/build.py", line 2234, in build_tree
    notest=notest,
  File "/opt/conda/lib/python3.6/site-packages/conda_build/build.py", line 1471, in build
    utils.check_call_env(cmd, env=env, cwd=src_dir, stats=build_stats)
  File "/opt/conda/lib/python3.6/site-packages/conda_build/utils.py", line 319, in check_call_env
    return _func_defaulting_env_to_os_environ('call', *popenargs, **kwargs)
  File "/opt/conda/lib/python3.6/site-packages/conda_build/utils.py", line 299, in _func_defaulting_env_to_os_environ
    raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-e', '/home/conda/feedstock_root/build_artifacts/valgrind_1538971316721/work/conda_build.sh']' returned non-zero exit status 2.
Exited with code 1

ref: https://circleci.com/gh/conda-forge/valgrind-feedstock/4

Edit: May be related to the -fno-stack-protector flag. This SO answer seems relevant.

jakirkham · 2018-10-11T20:08:26Z

Here's the macOS failure.

/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_=/usr/local/src/conda-prefix -c -o m_mach/libcoregrind_amd64_darwin_a-taskUser.o `test -f 'm_mach/taskUser.c' || echo './'`m_mach/taskUser.c
In file included from m_mach/taskUser.c:9:
m_mach/task.h:609:2: error: unknown type name 'mach_voucher_selector_t'
        mach_voucher_selector_t which,
        ^
m_mach/task.h:610:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t *voucher
        ^
m_mach/task.h:622:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t voucher
        ^
m_mach/task.h:634:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t new_voucher,
        ^
m_mach/task.h:635:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t *old_voucher
        ^
m_mach/task.h:1175:3: error: unknown type name 'mach_voucher_selector_t'
                mach_voucher_selector_t which;
                ^
m_mach/taskUser.c:6610:2: error: unknown type name 'mach_voucher_selector_t'
        mach_voucher_selector_t which,
        ^
m_mach/taskUser.c:6611:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t *voucher
        ^
m_mach/taskUser.c:6621:3: error: unknown type name 'mach_voucher_selector_t'
                mach_voucher_selector_t which;
                ^
m_mach/taskUser.c:6754:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t voucher
        ^
m_mach/taskUser.c:6928:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t new_voucher,
        ^
m_mach/taskUser.c:6929:2: error: unknown type name 'ipc_voucher_t'
        ipc_voucher_t *old_voucher
        ^
12 errors generated.
make[3]: *** [m_mach/libcoregrind_amd64_darwin_a-taskUser.o] Error 1
make[2]: *** [all] Error 2
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
Traceback (most recent call last):
  File "/Users/travis/miniconda3/bin/conda-build", line 11, in <module>
    sys.exit(main())
  File "/Users/travis/miniconda3/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 439, in main
    execute(sys.argv[1:])
  File "/Users/travis/miniconda3/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 430, in execute
    verify=args.verify, variants=args.variants)
  File "/Users/travis/miniconda3/lib/python3.6/site-packages/conda_build/api.py", line 201, in build
    notest=notest, need_source_download=need_source_download, variants=variants)
  File "/Users/travis/miniconda3/lib/python3.6/site-packages/conda_build/build.py", line 2234, in build_tree
    notest=notest,
  File "/Users/travis/miniconda3/lib/python3.6/site-packages/conda_build/build.py", line 1471, in build
    utils.check_call_env(cmd, env=env, cwd=src_dir, stats=build_stats)
  File "/Users/travis/miniconda3/lib/python3.6/site-packages/conda_build/utils.py", line 319, in check_call_env
    return _func_defaulting_env_to_os_environ('call', *popenargs, **kwargs)
  File "/Users/travis/miniconda3/lib/python3.6/site-packages/conda_build/utils.py", line 299, in _func_defaulting_env_to_os_environ
    raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-e', '/Users/travis/miniconda3/conda-bld/valgrind_1538971214277/work/conda_build.sh']' returned non-zero exit status 2.

ref: https://travis-ci.org/conda-forge/valgrind-feedstock/jobs/438445301

conda-forge-linter · 2018-10-11T20:08:42Z

Hi! This is the friendly automated conda-forge-linting service.

I was trying to look for recipes to lint for you, but it appears we have a merge conflict.
Please try to merge or rebase with the base branch to resolve this conflict.

Please ping the 'conda-forge/core' team (using the @ notation in a comment) if you believe this is a bug.

regro-cf-autotick-bot · 2018-10-11T21:53:37Z

Due to the bot-rerun label I'm closing this PR. I will make another one as appropriate.

jakirkham · 2018-10-12T14:14:42Z

Continued in PR ( #4 ).

regro-cf-autotick-bot added 2 commits October 8, 2018 03:56

bump build number

859f889

MNT: Re-rendered with conda-smithy 3.1.12 and pinning 2018.10.03

ddadcca

jakirkham added the bot-rerun Instruct the bot to retry the PR label Oct 11, 2018

regro-cf-autotick-bot closed this Oct 11, 2018

regro-cf-autotick-bot deleted the rebuild branch October 11, 2018 21:53

jakirkham mentioned this pull request Oct 12, 2018

Rebuild for Python 3.7, GCC 7, R 3.5.1, openBLAS 0.3.2 #4

Merged

jakirkham mentioned this pull request Oct 12, 2018

Trouble building valgrind with new compilers AnacondaRecipes/aggregate#89

Closed

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Rebuild for Python 3.7, GCC 7, R 3.5.1, openBLAS 0.3.2 #2

Rebuild for Python 3.7, GCC 7, R 3.5.1, openBLAS 0.3.2 #2

regro-cf-autotick-bot commented Oct 8, 2018

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jakirkham commented Oct 11, 2018 •

edited

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regro-cf-autotick-bot commented Oct 11, 2018

jakirkham commented Oct 12, 2018

Rebuild for Python 3.7, GCC 7, R 3.5.1, openBLAS 0.3.2 #2

Rebuild for Python 3.7, GCC 7, R 3.5.1, openBLAS 0.3.2 #2

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jakirkham commented Oct 11, 2018 •

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