JOSS Review: Error in Working_with_Annotations ipynb

[ayush9pandey]

I see the following error when running the annotations notebook on binder:

TypeError                                 Traceback (most recent call last)
Cell In[4], line 1
----> 1 get_miriam_resources().head()

File /srv/conda/envs/notebook/lib/python3.10/site-packages/basico/model_info.py:3951, in get_miriam_resources()
   3946         res = miriam.getMIRIAMResource(i)
   3947         assert (isinstance(res, COPASI.CMIRIAMResource))
   3948         resources.append({
   3949             'resource': res.getMIRIAMDisplayName(),
   3950             'is_citation': res.getMIRIAMCitation(),
-> 3951             'uri': res.getIdentifiersOrgURL()
   3952         })
   3953 except AttributeError:
   3954     logger.error("Couldn't retrieve list of miriam resources, please update the python-copasi version")

TypeError: CMIRIAMResource.getIdentifiersOrgURL() missing 1 required positional argument: 'compact'

[fbergmann]

Thanks for letting me know, a new parameter was added in COPASI 4.36 and I didn't realize. I'll make a new release for this!

[fbergmann]

This was released with release 0.51 thank you