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updating getting started with default example
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cornhundred committed Jul 18, 2019
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13 changes: 12 additions & 1 deletion docs/_build_html/_sources/getting_started.rst.txt
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Expand Up @@ -12,7 +12,18 @@ Using Clustergrammer
Clustergrammer can be used as a web application :ref:`clustergrammer_web`, a Jupyter Widget (:ref:`clustergrammer2` and :ref:`clustergrammer_widget`) or stand alone JavaScript libraries (:ref:`clustergrammer_gl` and :ref:`clustergrammer_js`). The newer :ref:`clustergrammer2` and :ref:`clustergrammer_gl` libraries are built to handle larger datasets such as scRNA-seq data.


scRNA-seq 2,700 PBMC Clustergrammer2 Example
Using Clustergrammer2
~~~~~~~~~~~~~~~~~~~~~~
.. raw:: html

<div style="position: relative; padding-bottom: 10px; height: 0; overflow: hidden; max-width: 100%; height: auto;">

<iframe width="560" height="315" src="https://www.youtube.com/embed/UgO5LLvcfB0" frameborder="0" allow="autoplay; encrypted-media" allowfullscreen></iframe>
</div>

This tutorial shows how Clustergrammer2 can be run on the cloud using MyBinder.

Single Cell Gene Expression 2,700 PBMC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. raw:: html
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14 changes: 11 additions & 3 deletions docs/_build_html/getting_started.html
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Expand Up @@ -86,7 +86,8 @@
<ul class="current">
<li class="toctree-l1 current"><a class="current reference internal" href="#">Getting Started</a><ul>
<li class="toctree-l2"><a class="reference internal" href="#using-clustergrammer">Using Clustergrammer</a></li>
<li class="toctree-l2"><a class="reference internal" href="#scrna-seq-2-700-pbmc-clustergrammer2-example">scRNA-seq 2,700 PBMC Clustergrammer2 Example</a><ul>
<li class="toctree-l2"><a class="reference internal" href="#using-clustergrammer2">Using Clustergrammer2</a></li>
<li class="toctree-l2"><a class="reference internal" href="#single-cell-gene-expression-2-700-pbmc">Single Cell Gene Expression 2,700 PBMC</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#case-studies-and-tutorials">Case Studies and Tutorials</a></li>
<li class="toctree-l3"><a class="reference internal" href="#interacting-with-clustergrammer-heatmaps">Interacting with Clustergrammer Heatmaps</a></li>
<li class="toctree-l3"><a class="reference internal" href="#clustergrammer-web-app">Clustergrammer Web-App</a></li>
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<h2>Using Clustergrammer<a class="headerlink" href="#using-clustergrammer" title="Permalink to this headline"></a></h2>
<p>Clustergrammer can be used as a web application <a class="reference internal" href="clustergrammer_web.html#clustergrammer-web"><span class="std std-ref">Clustergrammer-Web</span></a>, a Jupyter Widget (<a class="reference internal" href="clustergrammer2.html#clustergrammer2"><span class="std std-ref">Clustergrammer2</span></a> and <a class="reference internal" href="clustergrammer_widget.html#clustergrammer-widget"><span class="std std-ref">Clustergrammer-Widget</span></a>) or stand alone JavaScript libraries (<a class="reference internal" href="clustergrammer_gl.html#clustergrammer-gl"><span class="std std-ref">Clustergrammer-GL</span></a> and <a class="reference internal" href="clustergrammer_js.html#clustergrammer-js"><span class="std std-ref">Clustergrammer-JS</span></a>). The newer <a class="reference internal" href="clustergrammer2.html#clustergrammer2"><span class="std std-ref">Clustergrammer2</span></a> and <a class="reference internal" href="clustergrammer_gl.html#clustergrammer-gl"><span class="std std-ref">Clustergrammer-GL</span></a> libraries are built to handle larger datasets such as scRNA-seq data.</p>
</div>
<div class="section" id="scrna-seq-2-700-pbmc-clustergrammer2-example">
<h2>scRNA-seq 2,700 PBMC Clustergrammer2 Example<a class="headerlink" href="#scrna-seq-2-700-pbmc-clustergrammer2-example" title="Permalink to this headline"></a></h2>
<div class="section" id="using-clustergrammer2">
<h2>Using Clustergrammer2<a class="headerlink" href="#using-clustergrammer2" title="Permalink to this headline"></a></h2>
<div style="position: relative; padding-bottom: 10px; height: 0; overflow: hidden; max-width: 100%; height: auto;">

<iframe width="560" height="315" src="https://www.youtube.com/embed/UgO5LLvcfB0" frameborder="0" allow="autoplay; encrypted-media" allowfullscreen></iframe>
</div><p>This tutorial shows how Clustergrammer2 can be run on the cloud using MyBinder.</p>
</div>
<div class="section" id="single-cell-gene-expression-2-700-pbmc">
<h2>Single Cell Gene Expression 2,700 PBMC<a class="headerlink" href="#single-cell-gene-expression-2-700-pbmc" title="Permalink to this headline"></a></h2>
<div style="position: relative; padding-bottom: 10px; height: 0; overflow: hidden; max-width: 100%; height: auto;">

<iframe width="560" height="315" src="https://www.youtube.com/embed/BEPspcC7vIY" frameborder="0" allow="autoplay; encrypted-media" allowfullscreen></iframe>
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3 changes: 2 additions & 1 deletion docs/_build_html/index.html
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Expand Up @@ -212,7 +212,8 @@ <h2>Contents:<a class="headerlink" href="#contents" title="Permalink to this hea
<ul>
<li class="toctree-l1"><a class="reference internal" href="getting_started.html">Getting Started</a><ul>
<li class="toctree-l2"><a class="reference internal" href="getting_started.html#using-clustergrammer">Using Clustergrammer</a></li>
<li class="toctree-l2"><a class="reference internal" href="getting_started.html#scrna-seq-2-700-pbmc-clustergrammer2-example">scRNA-seq 2,700 PBMC Clustergrammer2 Example</a></li>
<li class="toctree-l2"><a class="reference internal" href="getting_started.html#using-clustergrammer2">Using Clustergrammer2</a></li>
<li class="toctree-l2"><a class="reference internal" href="getting_started.html#single-cell-gene-expression-2-700-pbmc">Single Cell Gene Expression 2,700 PBMC</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="case_studies.html">Case Studies and Tutorials</a><ul>
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2 changes: 1 addition & 1 deletion docs/_build_html/searchindex.js

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13 changes: 12 additions & 1 deletion docs/getting_started.rst
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Expand Up @@ -12,7 +12,18 @@ Using Clustergrammer
Clustergrammer can be used as a web application :ref:`clustergrammer_web`, a Jupyter Widget (:ref:`clustergrammer2` and :ref:`clustergrammer_widget`) or stand alone JavaScript libraries (:ref:`clustergrammer_gl` and :ref:`clustergrammer_js`). The newer :ref:`clustergrammer2` and :ref:`clustergrammer_gl` libraries are built to handle larger datasets such as scRNA-seq data.


scRNA-seq 2,700 PBMC Clustergrammer2 Example
Using Clustergrammer2
~~~~~~~~~~~~~~~~~~~~~~
.. raw:: html

<div style="position: relative; padding-bottom: 10px; height: 0; overflow: hidden; max-width: 100%; height: auto;">

<iframe width="560" height="315" src="https://www.youtube.com/embed/UgO5LLvcfB0" frameborder="0" allow="autoplay; encrypted-media" allowfullscreen></iframe>
</div>

This tutorial shows how Clustergrammer2 can be run on the cloud using MyBinder.

Single Cell Gene Expression 2,700 PBMC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

.. raw:: html
Expand Down

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