JOSS paper archival (updated)

This release entails all changes requested by reviewers at JOSS:

• Added overview table that puts overviewR in perspective with other R packages (in README)
• Make code visible how to generate modified toydata data sets (in README)
• Rename overview_print to overview_latex
• Deprecate separate file and path arguments in overview_latex and add file_path instead
• It also includes the paper and all accompanying material in paper/
• In contrast to v0.0.12 we also removed the footnote from the institution

JOSS paper archival

This release entails all changes requested by reviewers at JOSS:

• Added overview table that puts overviewR in perspective with other R packages (in README)
• Make code visible how to generate modified toydata data sets (in README)
• Rename overview_print to overview_latex
• Deprecate separate file and path arguments in overview_latex and add file_path instead
• It also includes the paper and all accompanying material in paper/

CRAN resubmission (overviewR 0.0.10)

Functionality

• It also adds an extended toydata data.frame (including variables for day)
• Possibility to use a data.table object with overview_tab and overview_na
• overview_plot
  • some consecutive years were not correctly connected before)
  • color argument to color parts of the time lines
  • Adjustable dot_size (default is 2)
• overview_print
  - label to add a cross-reference label
  - fontsize to change the font size
  - Fixed a small issue that can cause problems with large (and complex) TeX documents
• overview_crossplot
  - a new function that visualizes basically the same output as overview_crosstab
• overview_tab
  - if there is a NA in the id variable this observation will be automatically deleted. The user receives a warning.
  - possibility to use multiple time arguments
• overview_crosstab
  - if there is a NA in the id variable this observation will be automatically deleted. The user receives a warning.
• overview_na
  - Option to generate row_wise NA values
• overview_overlap
  - New function to compare (at the moment) two data sets using bar graphs (plot_type = "bar") or Venn diagrams (plot_type = "venn")

Bug fixes and issues

We fixed the following bugs and issues:

• Fixed bug in overview_tab function
  • Internal function returned an integer instead of a date when using multiple time options (also updated the vignettes)
• Fixed bug in vignette
  • "Having package code which is run as part of the checks and attempts to write to the user library violates the CRAN Policy's"
  • "Packages should not write in the user’s home filespace (including
    clipboards), nor anywhere else on the file system apart from the R
    session’s temporary directory (or during installation in the location
    pointed to by TMPDIR: and such usage should be cleaned up)."
• Increased the code coverage of units tests to 100%

Release for DOI

This release is triggered to create a DOI via Zenodo

With @dennis-hammerschmidt

New CRAN resubmission (overviewR 0.0.7)

overviewR 0.0.7

• CRAN resubmission
  We fixed the following bugs:
• Fixed bug in overview_plot function
  • Time line was not correctly displayed when a consecutive time variable was present for two different id variables
• Fixed bug in vignette
  • Loaded package dplyr to follow CRAN policies: "Packages which use Internet resources should fail gracefully with an informative message if the resource is not available or has changed (and not give a check warning nor error). CRAN versions of packages should work with the current CRAN and Bioconductor releases of packages they depend on and not anticipate nor recommend development versions of such packages (or themselves) on other repositories."

And added the following new features:

• Added function for overview_plot function
  • Y axis is now automatically ordered in ascending order
• Extended the overview_heat function
  • Y axis is now automatically ordered in ascending order
  • Introduced "label" argument to overview_heat that allows the user to select whether the percentage/total number of observations should be displayed or not

CRAN Resubmission

overviewR 0.0.6

• CRAN resubmission
• Added new functions:
  • overview_plot
  • overview_na
  • overview_heat
• Fixed two bugs in overview_plot and overview_tab that returned erroneous results on non-sorted data

overviewR CRAN release

overviewR 0.0.4

• CRAN release
• Further adjustments to new CRAN comments to avoid writing on the user's home filespace