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costrouc committed Oct 8, 2018
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28 changes: 17 additions & 11 deletions test_files/structure/3C-SiC.cif
Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
# generated using pymatgen
data_SiC
_symmetry_space_group_name_H-M 'P 1'
_cell_length_a 3.09681696
_cell_length_b 3.09681696
_cell_length_c 3.09681696
_cell_angle_alpha 60.00000000
_cell_angle_beta 60.00000000
_cell_angle_gamma 60.00000000
_cell_length_a 4.37956055
_cell_length_b 4.37956055
_cell_length_c 4.37956055
_cell_angle_alpha 90.00000000
_cell_angle_beta 90.00000000
_cell_angle_gamma 90.00000000
_symmetry_Int_Tables_number 1
_chemical_formula_structural SiC
_chemical_formula_sum 'Si1 C1'
_cell_volume 21.00059564
_cell_formula_units_Z 1
_chemical_formula_sum 'Si4 C4'
_cell_volume 84.00238257
_cell_formula_units_Z 4
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
Expand All @@ -24,5 +24,11 @@ loop_
_atom_site_fract_y
_atom_site_fract_z
_atom_site_occupancy
Si Si1 1 0.750000 0.750000 0.750000 1
C C2 1 0.000000 0.000000 0.000000 1
Si Si1 1 0.250000 0.250000 0.750000 1
Si Si2 1 0.250000 0.750000 0.250000 1
Si Si3 1 0.750000 0.250000 0.250000 1
Si Si4 1 0.750000 0.750000 0.750000 1
C C5 1 0.000000 0.000000 0.000000 1
C C6 1 0.000000 0.500000 0.500000 1
C C7 1 0.500000 0.000000 0.500000 1
C C8 1 0.500000 0.500000 0.000000 1
32 changes: 19 additions & 13 deletions test_files/structure/CdTe.cif
Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
# generated using pymatgen
data_CdTe
data_CeTe
_symmetry_space_group_name_H-M 'P 1'
_cell_length_a 4.68744537
_cell_length_b 4.68744537
_cell_length_c 4.68744537
_cell_angle_alpha 60.00000000
_cell_angle_beta 60.00000000
_cell_angle_gamma 60.00000000
_cell_length_a 6.34492374
_cell_length_b 6.34492374
_cell_length_c 6.34492374
_cell_angle_alpha 90.00000000
_cell_angle_beta 90.00000000
_cell_angle_gamma 90.00000000
_symmetry_Int_Tables_number 1
_chemical_formula_structural CdTe
_chemical_formula_sum 'Cd1 Te1'
_cell_volume 72.82720795
_cell_formula_units_Z 1
_chemical_formula_structural CeTe
_chemical_formula_sum 'Ce4 Te4'
_cell_volume 255.43430285
_cell_formula_units_Z 4
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
Expand All @@ -24,5 +24,11 @@ loop_
_atom_site_fract_y
_atom_site_fract_z
_atom_site_occupancy
Cd Cd1 1 0.000000 0.000000 0.000000 1
Te Te2 1 0.750000 0.750000 0.750000 1
Ce Ce1 1 0.500000 0.500000 0.000000 1
Ce Ce2 1 0.500000 0.000000 0.500000 1
Ce Ce3 1 0.000000 0.500000 0.500000 1
Ce Ce4 1 0.000000 0.000000 0.000000 1
Te Te5 1 0.000000 0.500000 0.000000 1
Te Te6 1 0.000000 0.000000 0.500000 1
Te Te7 1 0.500000 0.500000 0.500000 1
Te Te8 1 0.500000 0.000000 0.000000 1
25 changes: 12 additions & 13 deletions test_files/structure/He.cif
Original file line number Diff line number Diff line change
@@ -1,25 +1,21 @@
# generated using pymatgen
data_He
_symmetry_space_group_name_H-M 'P 1'
_cell_length_a 2.73717207
_cell_length_b 2.73717207
_cell_length_c 2.73717207
_cell_angle_alpha 109.47122063
_cell_angle_beta 109.47122063
_cell_angle_gamma 109.47122063
_cell_length_a 3.69809337
_cell_length_b 3.69809337
_cell_length_c 3.69809337
_cell_angle_alpha 90.00000000
_cell_angle_beta 90.00000000
_cell_angle_gamma 90.00000000
_symmetry_Int_Tables_number 1
_chemical_formula_structural He
_chemical_formula_sum He1
_cell_volume 15.78644752
_cell_formula_units_Z 1
_chemical_formula_sum He4
_cell_volume 50.57473522
_cell_formula_units_Z 4
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
1 'x, y, z'
loop_
_atom_type_symbol
_atom_type_oxidation_number
He1 0
loop_
_atom_site_type_symbol
_atom_site_label
Expand All @@ -29,3 +25,6 @@ loop_
_atom_site_fract_z
_atom_site_occupancy
He He1 1 0.000000 0.000000 0.000000 1
He He2 1 0.000000 0.500000 0.500000 1
He He3 1 0.500000 0.000000 0.500000 1
He He4 1 0.500000 0.500000 0.000000 1
105 changes: 54 additions & 51 deletions test_files/structure/LiNbO3.cif
Original file line number Diff line number Diff line change
@@ -1,53 +1,56 @@
# Part of the Crystallography Open Database
# All data on this site have been placed in the public domain by the
# contributors.
#------------------------------------------------------------------------------
#$Date: 2010-01-30 13:59:17 +0000 (Sat, 30 Jan 2010) $
#$Revision: 966 $
#$URL: svn://cod.ibt.lt/cod/cif/2/2101182.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2101182
# generated using pymatgen
data_LiNbO3
_symmetry_space_group_name_H-M 'P 1'
_cell_length_a 5.22298993
_cell_length_b 5.22298993
_cell_length_c 14.12924231
_cell_angle_alpha 90.00000000
_cell_angle_beta 90.00000000
_cell_angle_gamma 120.00000000
_symmetry_Int_Tables_number 1
_chemical_formula_structural LiNbO3
_chemical_formula_sum 'Li6 Nb6 O18'
_cell_volume 333.80119136
_cell_formula_units_Z 6
loop_
_publ_author_name
'Boysen, H.'
'Altorfer, F.'
_publ_section_title
;
A neutron powder investigation of the high-temperature structure and
phase transition in LiNbO~3~
;
_journal_issue 4
_journal_name_full 'Acta Crystallographica Section B'
_journal_page_first 405
_journal_page_last 414
_journal_volume 50
_journal_year 1994
_chemical_formula_sum 'Li Nb O3'
_symmetry_cell_setting trigonal
_symmetry_space_group_name_H-M 'R 3 c {rhombohedral axes}'
_cell_angle_alpha 90
_cell_angle_beta 90
_cell_angle_gamma 120
_cell_formula_units_Z 6
_cell_length_a 5.2719(8)
_cell_length_b 5.2719(8)
_cell_length_c 13.8601(8)
_[local]_cod_data_source_file se0126.cif
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
1 'x, y, z'
loop_
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
Li .0000 .0000 .2762(13)
Nb .0000 .0000 .0093(7)
O(1) .0569(9) .3297(15) .0833
_cod_database_code 2101182
_atom_site_type_symbol
_atom_site_label
_atom_site_symmetry_multiplicity
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_occupancy
Li Li1 1 0.666667 0.333333 0.050502 1
Li Li2 1 0.000000 0.000000 0.217168 1
Li Li3 1 0.333333 0.666667 0.383835 1
Li Li4 1 0.666667 0.333333 0.550502 1
Li Li5 1 0.000000 0.000000 0.717168 1
Li Li6 1 0.333333 0.666667 0.883835 1
Nb Nb7 1 0.666667 0.333333 0.332564 1
Nb Nb8 1 0.333333 0.666667 0.165897 1
Nb Nb9 1 0.333333 0.666667 0.665897 1
Nb Nb10 1 0.000000 0.000000 0.499231 1
Nb Nb11 1 0.000000 0.000000 0.999231 1
Nb Nb12 1 0.666667 0.333333 0.832564 1
O O13 1 0.009949 0.379633 0.270000 1
O O14 1 0.369684 0.990051 0.270000 1
O O15 1 0.620367 0.630316 0.270000 1
O O16 1 0.676615 0.963649 0.103334 1
O O17 1 0.287034 0.323385 0.103334 1
O O18 1 0.036351 0.712966 0.103334 1
O O19 1 0.676615 0.712966 0.603334 1
O O20 1 0.036351 0.323385 0.603334 1
O O21 1 0.287034 0.963649 0.603334 1
O O22 1 0.343282 0.296983 0.436667 1
O O23 1 0.953701 0.656718 0.436667 1
O O24 1 0.703017 0.046299 0.436667 1
O O25 1 0.343282 0.046299 0.936667 1
O O26 1 0.703017 0.656718 0.936667 1
O O27 1 0.953701 0.296983 0.936667 1
O O28 1 0.009949 0.630316 0.770000 1
O O29 1 0.620367 0.990051 0.770000 1
O O30 1 0.369684 0.379633 0.770000 1
58 changes: 39 additions & 19 deletions test_files/structure/LiTaO3.cif
Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
# generated using pymatgen
data_LiTaO3
_symmetry_space_group_name_H-M 'P 1'
_cell_length_a 5.53381920
_cell_length_b 5.53381920
_cell_length_c 5.53381920
_cell_angle_alpha 56.14486291
_cell_angle_beta 56.14486291
_cell_angle_gamma 56.14486291
_cell_length_a 5.20829097
_cell_length_b 5.20829097
_cell_length_c 13.93662478
_cell_angle_alpha 90.00000000
_cell_angle_beta 90.00000000
_cell_angle_gamma 120.00000000
_symmetry_Int_Tables_number 1
_chemical_formula_structural LiTaO3
_chemical_formula_sum 'Li2 Ta2 O6'
_cell_volume 109.13334376
_cell_formula_units_Z 2
_chemical_formula_sum 'Li6 Ta6 O18'
_cell_volume 327.40003129
_cell_formula_units_Z 6
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
Expand All @@ -24,13 +24,33 @@ loop_
_atom_site_fract_y
_atom_site_fract_z
_atom_site_occupancy
Li Li1 1 0.717744 0.717744 0.717744 1
Li Li2 1 0.217744 0.217744 0.217744 1
Ta Ta3 1 0.000553 0.000553 0.000553 1
Ta Ta4 1 0.500553 0.500553 0.500553 1
O O5 1 0.774014 0.139347 0.380142 1
O O6 1 0.880142 0.639347 0.274014 1
O O7 1 0.639347 0.274014 0.880142 1
O O8 1 0.274014 0.880142 0.639347 1
O O9 1 0.380142 0.774014 0.139347 1
O O10 1 0.139347 0.380142 0.774014 1
Li Li1 1 0.666667 0.333333 0.051077 1
Li Li2 1 0.000000 0.000000 0.217744 1
Li Li3 1 0.333333 0.666667 0.384410 1
Li Li4 1 0.666667 0.333333 0.551077 1
Li Li5 1 0.000000 0.000000 0.717744 1
Li Li6 1 0.333333 0.666667 0.884410 1
Ta Ta7 1 0.000000 0.000000 0.000553 1
Ta Ta8 1 0.333333 0.666667 0.167219 1
Ta Ta9 1 0.666667 0.333333 0.333886 1
Ta Ta10 1 0.000000 0.000000 0.500553 1
Ta Ta11 1 0.333333 0.666667 0.667219 1
Ta Ta12 1 0.666667 0.333333 0.833886 1
O O13 1 0.041513 0.717692 0.097835 1
O O14 1 0.374846 0.990487 0.264501 1
O O15 1 0.009513 0.384359 0.264501 1
O O16 1 0.615641 0.625154 0.264501 1
O O17 1 0.676180 0.958487 0.097835 1
O O18 1 0.282308 0.323820 0.097835 1
O O19 1 0.708179 0.051026 0.431168 1
O O20 1 0.041513 0.323820 0.597835 1
O O21 1 0.676180 0.717692 0.597835 1
O O22 1 0.282308 0.958487 0.597835 1
O O23 1 0.342847 0.291821 0.431168 1
O O24 1 0.948974 0.657153 0.431168 1
O O25 1 0.374846 0.384359 0.764501 1
O O26 1 0.708179 0.657153 0.931168 1
O O27 1 0.342847 0.051026 0.931168 1
O O28 1 0.948974 0.291821 0.931168 1
O O29 1 0.009513 0.625154 0.764501 1
O O30 1 0.615641 0.990487 0.764501 1
26 changes: 16 additions & 10 deletions test_files/structure/MgO.cif
Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
# generated using pymatgen
data_MgO
_symmetry_space_group_name_H-M 'P 1'
_cell_length_a 3.00978813
_cell_length_b 3.00978813
_cell_length_c 3.00978813
_cell_angle_alpha 60.00000000
_cell_angle_beta 60.00000000
_cell_angle_gamma 60.00000000
_cell_length_a 4.25648319
_cell_length_b 4.25648319
_cell_length_c 4.25648319
_cell_angle_alpha 90.00000000
_cell_angle_beta 90.00000000
_cell_angle_gamma 90.00000000
_symmetry_Int_Tables_number 1
_chemical_formula_structural MgO
_chemical_formula_sum 'Mg1 O1'
_cell_volume 19.27936732
_cell_formula_units_Z 1
_chemical_formula_sum 'Mg4 O4'
_cell_volume 77.11746928
_cell_formula_units_Z 4
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
Expand All @@ -25,4 +25,10 @@ loop_
_atom_site_fract_z
_atom_site_occupancy
Mg Mg1 1 0.000000 0.000000 0.000000 1
O O2 1 0.500000 0.500000 0.500000 1
Mg Mg2 1 0.000000 0.500000 0.500000 1
Mg Mg3 1 0.500000 0.000000 0.500000 1
Mg Mg4 1 0.500000 0.500000 0.000000 1
O O5 1 0.500000 0.000000 0.000000 1
O O6 1 0.500000 0.500000 0.500000 1
O O7 1 0.000000 0.000000 0.500000 1
O O8 1 0.000000 0.500000 0.000000 1
25 changes: 12 additions & 13 deletions test_files/structure/Ne.cif
Original file line number Diff line number Diff line change
@@ -1,25 +1,21 @@
# generated using pymatgen
data_Ne
_symmetry_space_group_name_H-M 'P 1'
_cell_length_a 3.04326460
_cell_length_b 3.04326460
_cell_length_c 3.04326460
_cell_angle_alpha 60.00000000
_cell_angle_beta 60.00000000
_cell_angle_gamma 60.00000000
_cell_length_a 4.30382607
_cell_length_b 4.30382607
_cell_length_c 4.30382607
_cell_angle_alpha 90.00000000
_cell_angle_beta 90.00000000
_cell_angle_gamma 90.00000000
_symmetry_Int_Tables_number 1
_chemical_formula_structural Ne
_chemical_formula_sum Ne1
_cell_volume 19.92985531
_cell_formula_units_Z 1
_chemical_formula_sum Ne4
_cell_volume 79.71942122
_cell_formula_units_Z 4
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
1 'x, y, z'
loop_
_atom_type_symbol
_atom_type_oxidation_number
Ne1 0
loop_
_atom_site_type_symbol
_atom_site_label
Expand All @@ -29,3 +25,6 @@ loop_
_atom_site_fract_z
_atom_site_occupancy
Ne Ne1 1 0.000000 0.000000 0.000000 1
Ne Ne2 1 0.000000 0.500000 0.500000 1
Ne Ne3 1 0.500000 0.000000 0.500000 1
Ne Ne4 1 0.500000 0.500000 0.000000 1
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