Switch README to github markdown

README → README.md

@@ -1,36 +1,50 @@
+# Citation
 
 If you use this software, please cite the corresponding publication:
 
+```
 @article{Berenger2010,
 author = {Berenger, Francois and Coti, Camille and Zhang, Kam Y. J.},
 title = {{PAR: A PARallel And Distributed Job Crusher}},
 doi = {10.1093/bioinformatics/btq542},
 year = {2010},
 journal = {Bioinformatics}
 }
+```
 
-# you need to install rfoo: http://code.google.com/p/rfoo/
+# External dependencies
+
+You need to install rfoo: http://code.google.com/p/rfoo/
 
 # Some usage examples:
+## Basic examples
 
-# run in parallel commands from test_parallel.input
+Run in parallel commands from test_parallel.input
+```
 cat test_parallel.input | ./parallel.py -i /dev/stdin
+```
 
-# same than before but with a progress bar
+Same than before but with a progress bar
+```
 cat test_parallel.input | ./parallel.py -i /dev/stdin -v
-
-# run in parallel commands from test_parallel.input and store output
-# in output.log
+```
+Run in parallel commands from test_parallel.input and store output in output.log
+```
 ./parallel.py -i test_parallel.input -o output.log
+```
 
-# same than before but with a user defined output printer
+Same than before but with a user defined output printer
+```
 ./parallel.py -i test_parallel.input -o output.log -p post_proc_example
+```
 
 ## real world usage example
-# 1) server side
+1. server side
+```
 ./parallel.py -v -i many_commands.sh -o par_many_commands.log -s
-# 2) client side, on each machine you want to join the computation
-#    replace SERVER_NAME by the machine name from where you launched
-#    parallel.py using -s
+```
+2. client side, on each machine you want to join the computation replace SERVER_NAME by the machine name from where you launched parallel.py using `-s`
+```
 ./parallel.py -c SERVER_NAME
-# 3) be thrilled! ;)
+```
+3. be thrilled! ;)