v1.41.0 - Beta blocker guideline and methadone guideline

1.41.0 (2024-07-25)

Features

• data update for new beta-blocker and methadone guidelines (fc3d153)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.41.0.sql.gz

v1.40.1

1.40.1 (2024-07-11)

Features

• Update to PharmVar v6.1.3: new CYP2D6 alleles and updated DPYD protein metadata

Bug Fixes

• fix bug when iterating through alleles for frequency import (e2e2ce5)
• restrict file templates for non-rec genes in GuidelineStarterPack (e9222f4)
• update JSON props for PharmGKB API (3db41a4)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.40.1.sql.gz

v1.40.0

1.40.0 (2024-05-10)

Features

• add column definition sheet to function files (4c7cec2)
• add deployed release tag to change_log table and update view (7b1d29d)
• add new CPIC DB size stat (519514b)

Bug Fixes

• fix github actions config (fbf2a46)
• fix import of AS genes in test alert files (d84eb7d)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.40.0.sql.gz

v1.39.0 - Thiopurines update

1.39.0 (2024-03-28)

Features

• update recommendation and test alert data for Thiopurines (more info)
• add an "unversioned" DB dump file to S3 on release (7729a56)

Bug Fixes

• fix allele definition export ordering (39f50e7)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.39.0.sql.gz

v1.38.0

1.38.0 (2024-02-15)

Features

• data update (76752d3)

Bug Fixes

• fix handling of null SQL array values (2a1efa1)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.38.0.sql.gz

v1.37.0 - DPYD Allele Update

1.37.0 (2024-01-12)

Features

• data update (DPYD allele update) (5c7f22d)

Bug Fixes

• change default DB for node connections (ae55792)
• fix permissions for recommendation DB functions (f827394)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.37.0.sql.gz

v1.36.0 - MT-RNR1 allele name update

1.36.0 (2023-12-21)

All MT-RNR1 allele names have been updated to include m. as a prefix to indicate they are on a mitochondrial sequence.

Features

• data update (MT-RNR1 allele name update) (f1c62ac)

Bug Fixes

• remove typo (f40f6f6)
• specify DB user for dump script (0a1fd9cFull DB export available:

https://files.cpicpgx.org/data/database/cpic_db_dump-v1.36.0.sql.gz

v1.35.0

1.35.0 (2023-12-18)

Features

• data update (040a58a)
• PharmVar update of CYP2D6 allele definitions. See data.tsv for details

Bug Fixes

• fix importing of notes in the allele function files (b019f78)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.35.0.sql.gz

v1.34.0

1.34.0 (2023-12-15)

Features

• add pediatric warfarin diagram (926a4ff)
• data update (a5b08bf)
• write notes tab to diplotype-phenotype file (2b68dc7)

Bug Fixes

• change to use gnomad genome instead of exome (a76438e)
• export gene names with phenotype values in excel files (443f3ef)
• fix bad pattern for "Indeterminate" detection (a49d208)
• fix import of clinvar submission data (2a66ee0)
• fix typo in warfarin diagram (60c7f6c)
• fix warfarin diagram (7bda6db), closes PharmGKB/PharmCAT#164

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.34.0.sql.gz

v1.33.0

1.33.0 (2023-10-24)

Features

• data update (bcff6b5)

Bug Fixes

• import change log messages from PairDiffImporter (2e63a7f)

Full DB export available: https://files.cpicpgx.org/data/database/cpic_db_dump-v1.33.0.sql.gz