version 0.3.0

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: manynet
-Title: Many Ways to Make, Manipulate, and Map Myriad Networks
-Version: 0.2.8
-Date: 2023-11-02
-Description: A set of tools for making, manipulating, and mapping many different types of networks.
+Title: Many Ways to Make, Modify, and Map Myriad Networks
+Version: 0.3.0
+Date: 2023-12-15
+Description: A set of tools for making, modifying, and mapping many different types of networks.
    All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
    and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
    The package includes functions for importing and exporting, creating and generating networks,
@@ -16,11 +16,12 @@ Language: en-GB
 Encoding: UTF-8
 LazyData: true
 RoxygenNote: 7.2.3
-Imports: dplyr (>= 1.1.0), ggplot2, ggraph, igraph (>= 1.5.0.1),
-        network, tidygraph
-Suggests: gganimate, methods, readxl, roxygen2, RSiena, testthat, xml2,
-        patchwork, rmarkdown, learnr, grDevices, BiocManager, minMSE,
-        graphlayouts, ggforce, multiplex, concaveman, migraph, knitr
+Imports: dplyr (>= 1.1.0), ggplot2, ggraph, igraph (>= 1.6.0), network,
+        tidygraph
+Suggests: BiocManager, concaveman, gganimate, ggforce, gifski,
+        graphlayouts, grDevices, knitr, learnr, methods, migraph,
+        minMSE, multiplex, patchwork, png, readxl, rmarkdown, roxygen2,
+        RSiena, testthat, xml2
 Enhances: Rgraphviz
 Authors@R: 
     c(person(given = "James",
@@ -34,10 +35,10 @@ Authors@R:
              comment = c("IHEID", ORCID = "0000-0003-3420-6085"))
     )
 NeedsCompilation: no
-Packaged: 2023-11-02 08:49:47 UTC; hollway
+Packaged: 2023-12-15 18:39:06 UTC; hollway
 Author: James Hollway [cre, aut, ctb] (IHEID,
     <https://orcid.org/0000-0002-8361-9647>),
   Henrique Sposito [ctb] (IHEID, <https://orcid.org/0000-0003-3420-6085>)
 Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
 Repository: CRAN
-Date/Publication: 2023-11-02 10:10:08 UTC
+Date/Publication: 2023-12-15 19:10:02 UTC

MD5

@@ -1,35 +1,35 @@
-8a806c803cd7e177a22f162f94918164 *DESCRIPTION
+c606d31e46407716819a093f20223ec0 *DESCRIPTION
 361d71c6379f4ddf09ca9c8540b8fea1 *LICENSE
-bd6cfd5ca3bb7fc6cead1bd6cb97febb *NAMESPACE
-c5ce4b06d504aea0c10c0d6803963de0 *NEWS.md
-02bc41f69d220553f1ed24eb2cd97bd7 *R/data_ison.R
-69aad26ca508f40dc04a3c2012be020d *R/make_as.R
-280195557bbe3c28bd67cde1f5423490 *R/make_create.R
+83e5fc83a4f4158589dc43cda7fb0dde *NAMESPACE
+27f0ee5527ecc55c8cbde34bddf0417b *NEWS.md
+cf2435748a8b6b7f626e8d9662841bf4 *R/data_ison.R
+f7cdeef0484aa4b2e6d0e5446dbe6cb8 *R/make_as.R
+e1a167904dc146b0e7d74ce6465b4f54 *R/make_create.R
 80edd6b5d8b5adf4b6df0477cfc5ba08 *R/make_generate.R
-ae917bc4b4e693789611337e6c17f0b3 *R/make_read.R
+6de3e61bb616e6dc169ee1b9031ceba8 *R/make_read.R
 eaf9a4357387f0e949880e03221472dd *R/manip_add.R
-53c02b0642c4c2bd507849f3a6f67eb3 *R/manip_from.R
+aa8523a25cadd05f8643e18c9f80b817 *R/manip_from.R
 e9aad6f23cbc1657f3281237185c8908 *R/manip_miss.R
 d73404a5606cf6a09536e6a74f82db27 *R/manip_reformat.R
-62f53c3ab0913ff606b0a9eafed507e6 *R/manip_split.R
-29095322bb905d8551d7577e09a1a815 *R/manip_tidy.R
-4f6db6dad423e565e48dc4a6c8bb803f *R/manip_transform.R
-e6904ca7fa87c64684580f5b36e5896d *R/manynet-utils.R
+ddebf4ca3f1ebb734de3e8d2f3ccd55d *R/manip_split.R
+78653dfe018dec5b5a4b8b86f6746e6e *R/manip_tidy.R
+f70736938a610ea13be209d7fc97e039 *R/manip_transform.R
+4a882a8cd61a5298cd78a1c4ab79341b *R/manynet-utils.R
 5a485b8100c0667e5fdd249c345a4bff *R/map_attributes.R
-6c11002a4cde244ac71aa9ffd487ad05 *R/map_autographr.R
-262ac6411f46c6a8eea206024cfc863c *R/map_is.R
+985385d17a685572be90a0647dd9682b *R/map_autographr.R
+e43293c5b95f531755f0a54f5bf9b0e1 *R/map_is.R
 03ab8191b1cf3c15b696674d30575385 *R/map_layout_configurations.R
-342ac9b10ccf9901fe08e425ba89dd14 *R/map_layout_partition.R
-0d7ca36ea61db3e49d747d266bb6f45f *R/map_palettes.R
+5a7f1840886b27f1167715959325c0b1 *R/map_layout_partition.R
+05f5e01bf07b597e4545512f44f31224 *R/map_palettes.R
 46ee795018bd813bbe3f27b336e8a5f2 *R/map_plot.R
 79cd003ad6cc4e2ce5a4fccf8362ec5e *R/map_properties.R
-23bc93dedfe0fd95bcac514870ea8c49 *R/map_theme.R
-67f96d80e0d14643b440006c8cdebdcc *R/pkg_tutorials.R
+e80a75894083d9fa78b150dae95c5e7e *R/map_theme.R
+4741f012ab49fb3ddaa66bab41fd9bb2 *R/pkg_tutorials.R
 5236e0cc640107f87cddad26675f950d *R/print_classes.R
-33162022353ceac96f9282149c710d90 *R/reexports_classes.R
+72298be92ca4a27067ff90412cbaf528 *R/reexports_classes.R
 5b6bdf57abcbb9776d5b05ae9d0c1192 *R/reexports_ggplot2.R
 c32b17bf67aaa82f9497832d48ffc8b1 *R/sysdata.rda
-4b9bfd6c53c4bd1ecd20ab3cae7d3729 *README.md
+32ec7397313ca60b01e8c328dcfd4585 *README.md
 7080893e02c49cd296d4424b9be55069 *build/partial.rdb
 165a53aa74d16bf17d9476a4cdca3567 *data/ison_adolescents.rda
 6cf9912e5d2333707d2cc68a94932df0 *data/ison_algebra.rda
@@ -43,8 +43,9 @@ ffe9cca1f76c1fe8bc16265b57da49f7 *data/ison_laterals.rda
 c670cc2e0d2c9d2fb0f7be97c56ed735 *data/ison_marvel_relationships.rda
 daa202d696a0ff4374a92d1927eb8572 *data/ison_marvel_teams.rda
 71bbdb2d12fa0f33beb14aff1380850b *data/ison_networkers.rda
+e471c2c1768613625878053ba43bc4f5 *data/ison_physicians.rda
 b45178a091e0cdb0ab2ba12abaf63e4e *data/ison_southern_women.rda
-07c715905e441c120548dd9aca612b84 *data/ison_starwars.rda
+52ea22cd92711bd8e7609af7cd08cc27 *data/ison_starwars.rda
 a8b18fd3012e113ac1533d3e43e28d02 *inst/manynet.png
 6e0be5083134ab3fcc8f9cec2dbabee7 *inst/tutorials/tutorial0/tutorial0.Rmd
 4edc5019054f1f72a882dc66d4cbebf3 *inst/tutorials/tutorial1/data.Rmd
@@ -59,16 +60,12 @@ dbd302bd9c1e2c921c6255d740ca5c0b *inst/tutorials/tutorial1/data/flonode.csv
 577785c00b8026d2e5400086537611cb *man/add.Rd
 daadf1d5c685eba1af39e765c9a13ae6 *man/as.Rd
 c319969f8a0e8d332a181e627c446699 *man/attributes.Rd
-73b6419ec6cef1c98e6c7fc890fbc0f2 *man/autographing.Rd
-4d03cfb73077c341188bdb80d3ea7234 *man/configuration_layouts.Rd
+3c5b24cbbb001aeb48b669ee349ff5df *man/autographing.Rd
+94d336e765edc6615e19ccccbb1a89c2 *man/configuration_layouts.Rd
 d820a2ec1e34da685561d025a0185fd0 *man/create.Rd
-dee15f2df87cb2a19a5860cac7c87264 *man/figures/README-coercion-graph-1.png
-34076488ddf8d5fcab83b9b25dffc725 *man/figures/README-import-graph-1.png
-4aa3a28863f403109d42ab15aa6534da *man/figures/README-layout-comparison-1.png
 ca331d67c1914f18ff55433134498306 *man/figures/logo.png
-955258e5212728cea3c637a208ce7fb6 *man/from.Rd
+7b7ab972bd8cc2fb19a5dcccbb0f183b *man/from.Rd
 d0dd2753d52c9a5e7f24fb93b8e72c3d *man/generate.Rd
-edfcaf83ff872619c2e7528a03a713f8 *man/iheid_palette.Rd
 016688366338051d0f3a8b9391492a15 *man/is.Rd
 591e01664c34c3bf8fc05f3b1b7f701a *man/ison_adolescents.Rd
 0cdb6bc6532ffe76d53d4c75e699e5b3 *man/ison_algebra.Rd
@@ -81,23 +78,26 @@ b94a9a90bf5c92b623027197d82f0367 *man/ison_laterals.Rd
 8ab78343453cf73071d803b66380b423 *man/ison_lotr.Rd
 67bbd04ac49c239adf69379d49d7c333 *man/ison_marvel.Rd
 fff4960e03cc4cefa853e1462743260a *man/ison_networkers.Rd
+658734c603b99fbb43a1133765abc8b5 *man/ison_physicians.Rd
 2570b5f6d14d1a24ca18c4816f9df152 *man/ison_southern_women.Rd
-28c884230a6bc5e67aa48a2ac20ccd1d *man/ison_starwars.Rd
+a13d3ed154d3f4a9c057eaea58a6a897 *man/ison_starwars.Rd
+3730179bff4666e8d6f0469b621b24f3 *man/many_palettes.Rd
 f5cd8e08542281e8877896bb2f1e2679 *man/miss.Rd
-8ccbf0a0425cd4cae306d45f3c117243 *man/partition_layouts.Rd
+dad5d16244a3386f3bb8701261fa5d69 *man/partition_layouts.Rd
 19a0aaf309f0d41de1f69871016740e4 *man/properties.Rd
-ee22c63fcf1ba72a300617b658cdcd69 *man/read.Rd
-74cd9b0a7752d1047ee138a8936950bd *man/reexports.Rd
+88f38724acbd125abb82a80f352c5ec2 *man/read.Rd
+683c410919293e4ee0195cc8d7fb35d2 *man/reexports.Rd
 76dfe722f52ddcf2ba64725e261dfdf2 *man/reformat.Rd
-3c69cfa9aa1b4e7a6ba9ceba7f6324d1 *man/scales.Rd
-98a4acacc3b543d909a6982eb1533054 *man/split.Rd
-775b089b3feb4f43a66f4cafabdfa589 *man/themes.Rd
+4ebb4db33079546faa566a3667bacffc *man/scales.Rd
+888a8074cef202afce070578a1a48174 *man/split.Rd
+41fee74f76a5862bcf9ec42a1a0fca5d *man/themes.Rd
 1467c5cf3b719c40514260257c027b5b *man/tidy.Rd
-3abbdf02ef3ee0f554418dada7687521 *man/transform.Rd
+10297ac08e8631c72bd164d5204bfcb1 *man/transform.Rd
 4d5b8f29e189b206d95e3448a8158fd5 *man/tutorials.Rd
 594c90777a4f17666af95dce0dbb4d17 *tests/testthat.R
 4a312f7e35283b4c0b85e800491103e5 *tests/testthat/sheets/SouthernWomen.paj
 89a78d83fa6c80560955c6f2dc887e33 *tests/testthat/sheets/SouthernWomen.xml
+57d1091464a89de84f645a2225cf9bd2 *tests/testthat/sheets/nassau.graphml
 c4269337ab93ffc8e44378f61509df40 *tests/testthat/sheets/southern_women.Rds
 e8237c3cdfe1ae925ba7d6c9af5bbcbb *tests/testthat/sheets/test.xlsx
 379669e3daccbbf15187621d1b3d0812 *tests/testthat/sheets/testCSVComma.csv
@@ -109,15 +109,16 @@ bdd9ad82944ff4c6cc1171e853071012 *tests/testthat/sheets/ucinettest.##h
 bdd9ad82944ff4c6cc1171e853071012 *tests/testthat/sheets/ucinettest1.##h
 6e36522f661de1ec7c05f2b5d7493f34 *tests/testthat/test-make_create.R
 9fa727b7cffe964ca8637cb47cd8341d *tests/testthat/test-make_generate.R
-cdbac54b8a56d7007e5696222d913847 *tests/testthat/test-make_read.R
+e22ad1a8fac1e9d13be6baf2bcd4b3cb *tests/testthat/test-make_read.R
 75c447fe8a95ea6707ced6fd999b4853 *tests/testthat/test-manip_add.R
-e704b7958c4e61614d5f3d6ca466fd46 *tests/testthat/test-manip_as.R
+eb7f2ac7ea90a38175b65e3f587ad6c8 *tests/testthat/test-manip_as.R
 b51f8cdc30203b9774ece4f36ec6bcea *tests/testthat/test-manip_grab.R
 b644d01d099d612cc806972a4ad28c84 *tests/testthat/test-manip_miss.R
 d7a9db995bdb8e37043eec3b2614d23b *tests/testthat/test-manip_reformat.R
-6a03770649c99095fb7a58a9ba04fd53 *tests/testthat/test-manip_split.R
+58192e6585ca84ca30c52e05f5208800 *tests/testthat/test-manip_split.R
 47b2d9d25c1b81d27a4439995ac5f7c6 *tests/testthat/test-manip_transform.R
-11134ac6e6d21ecfbe25bcba9ef4f128 *tests/testthat/test-map_autographr.R
+dd7c2e52c0d2d8691c5e1421263a2817 *tests/testthat/test-map_autographr.R
 d699c2b2e6326cd476b4f1539b22b53a *tests/testthat/test-map_is.R
+24f91d41ff044ce69330391a1bcfc9bb *tests/testthat/test-map_theme.R
 805f7fd21fcb36696bce345246b6c741 *tests/testthat/test-print_class.R
 04d5192ce082546e899ea7bb5250e7e4 *tests/testthat/test_plots.R

NAMESPACE

@@ -1,5 +1,6 @@
 # Generated by roxygen2: do not edit by hand
 
+S3method("+",ggplot)
 S3method(add_nodes,igraph)
 S3method(add_nodes,network)
 S3method(add_nodes,tbl_graph)
@@ -42,7 +43,9 @@ S3method(as_network,network.goldfish)
 S3method(as_network,siena)
 S3method(as_network,tbl_graph)
 S3method(as_siena,igraph)
+S3method(as_siena,tbl_graph)
 S3method(as_tidygraph,data.frame)
+S3method(as_tidygraph,diff_model)
 S3method(as_tidygraph,igraph)
 S3method(as_tidygraph,list)
 S3method(as_tidygraph,matrix)
@@ -90,6 +93,7 @@ S3method(is_twomode,data.frame)
 S3method(is_twomode,igraph)
 S3method(is_twomode,matrix)
 S3method(is_twomode,network)
+S3method(is_twomode,numeric)
 S3method(is_twomode,tbl_graph)
 S3method(is_weighted,data.frame)
 S3method(is_weighted,igraph)
@@ -239,13 +243,13 @@ S3method(to_unweighted,matrix)
 S3method(to_unweighted,network)
 S3method(to_unweighted,tbl_graph)
 S3method(to_waves,data.frame)
+S3method(to_waves,diff_model)
 S3method(to_waves,igraph)
 S3method(to_waves,tbl_graph)
 export("%>%")
 export(.E)
 export(.G)
 export(.N)
-export(activate)
 export(add_node_attribute)
 export(add_nodes)
 export(add_tie_attribute)
@@ -289,13 +293,11 @@ export(ggplot)
 export(ggsave)
 export(ggtitle)
 export(guides)
-export(iheid_palette)
 export(is.igraph)
 export(is.network)
 export(is.tbl_graph)
 export(is_acyclic)
 export(is_aperiodic)
-export(is_bipartite)
 export(is_complex)
 export(is_connected)
 export(is_directed)
@@ -319,10 +321,12 @@ export(layout_tbl_graph_alluvial)
 export(layout_tbl_graph_concentric)
 export(layout_tbl_graph_hierarchy)
 export(layout_tbl_graph_ladder)
+export(layout_tbl_graph_lineage)
 export(layout_tbl_graph_multilevel)
 export(layout_tbl_graph_quad)
 export(layout_tbl_graph_railway)
 export(layout_tbl_graph_triad)
+export(many_palettes)
 export(mutate)
 export(mutate_ties)
 export(na_to_mean)
@@ -337,6 +341,7 @@ export(node_mode)
 export(node_names)
 export(read_dynetml)
 export(read_edgelist)
+export(read_graphml)
 export(read_matrix)
 export(read_nodelist)
 export(read_pajek)
@@ -345,17 +350,29 @@ export(rename)
 export(rename_ties)
 export(run_tute)
 export(scale_color_centres)
+export(scale_color_ethz)
 export(scale_color_iheid)
+export(scale_color_rug)
 export(scale_color_sdgs)
+export(scale_color_uzh)
 export(scale_colour_centres)
+export(scale_colour_ethz)
 export(scale_colour_iheid)
+export(scale_colour_rug)
 export(scale_colour_sdgs)
+export(scale_colour_uzh)
 export(scale_fill_centres)
+export(scale_fill_ethz)
 export(scale_fill_iheid)
+export(scale_fill_rug)
 export(scale_fill_sdgs)
+export(scale_fill_uzh)
 export(select_ties)
 export(summarise_ties)
+export(theme_ethz)
 export(theme_iheid)
+export(theme_rug)
+export(theme_uzh)
 export(tie_attribute)
 export(tie_signs)
 export(tie_weights)
@@ -392,6 +409,7 @@ export(to_unweighted)
 export(to_waves)
 export(with_graph)
 export(write_edgelist)
+export(write_graphml)
 export(write_matrix)
 export(write_nodelist)
 export(write_pajek)
@@ -440,10 +458,6 @@ importFrom(ggraph,geom_node_text)
 importFrom(ggraph,get_con)
 importFrom(ggraph,ggraph)
 importFrom(ggraph,scale_edge_width_continuous)
-importFrom(graphics,image)
-importFrom(graphics,par)
-importFrom(graphics,rect)
-importFrom(graphics,text)
 importFrom(igraph,E)
 importFrom(igraph,V)
 importFrom(igraph,add_edges)
@@ -452,8 +466,8 @@ importFrom(igraph,any_multiple)
 importFrom(igraph,as.directed)
 importFrom(igraph,as.undirected)
 importFrom(igraph,as_adjacency_matrix)
+importFrom(igraph,as_biadjacency_matrix)
 importFrom(igraph,as_data_frame)
-importFrom(igraph,as_incidence_matrix)
 importFrom(igraph,bipartite.projection)
 importFrom(igraph,complementer)
 importFrom(igraph,decompose)
@@ -468,8 +482,8 @@ importFrom(igraph,eulerian_path)
 importFrom(igraph,get.edgelist)
 importFrom(igraph,get.vertex.attribute)
 importFrom(igraph,graph_from_adjacency_matrix)
+importFrom(igraph,graph_from_biadjacency_matrix)
 importFrom(igraph,graph_from_data_frame)
-importFrom(igraph,graph_from_incidence_matrix)
 importFrom(igraph,gsize)
 importFrom(igraph,induced_subgraph)
 importFrom(igraph,is.connected)
@@ -488,6 +502,7 @@ importFrom(igraph,make_line_graph)
 importFrom(igraph,make_star)
 importFrom(igraph,make_tree)
 importFrom(igraph,max_bipartite_match)
+importFrom(igraph,read_graph)
 importFrom(igraph,reverse_edges)
 importFrom(igraph,sample_bipartite)
 importFrom(igraph,sample_gnm)