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activity to teach genome assembly (w/NGS data) to advanced undergrad or early grad bio students

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teaching_genome_assembly

activity to teach genome assembly (w/NGS data) to advanced undergrad or early grad bio students

possibly too simple instructions

  1. download the git repo

  2. unzip and move into directory containing files

  3. run

sh assembly_NGS_data_generator.sh <# of "illumina" reads> <# of "pacbio" reads>

e.g.

sh assembly_NGS_data_generator.sh 100 10 mlkjr.txt |ning of i:s cree| |ream ihat one da| |eicontent of the| |ls of Geoegia, t| . . . . |meioday! I have a dream that one day this nation will rise up and live out| |dotn together at the table of brotherhood. I have a dream today! I have a d| |sehf former slaves and the sons of former slave owners will be able to sit| . .

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