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Start refactoring pyIRF #36

Merged
merged 110 commits into from Sep 27, 2020
Merged

Start refactoring pyIRF #36

merged 110 commits into from Sep 27, 2020

Commits on Sep 21, 2020

  1. Start rewriting pyIRF 

    Implemented in this commit:

* reading of EventDisplay DL2 fits files
* Calculating event weights
* Functions for binning events
* Li&Ma Significance

Definition of the internal data format, for now astropy.table.QTables
with several columns expected for DL2 event lists.

Co-authored-by: Michele Peresano <michele.peresano@cea.fr>
Co-authored-by: Lukas Nickel <lukas.nickel@tu-dortmund.de>
    @maxnoe @LukasNickel
    3 people committed Sep 21, 2020
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  2. Fix docs and include new pages in it 

    Co-authored-by: Michele Peresano <michele.peresano@cea.fr>
Co-authored-by: Lukas Nickel <lukas.nickel@tu-dortmund.de>
    @maxnoe @LukasNickel
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  3. Remove test for old io

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  4. Fix unit of PDG spectrum, fix electron class, add example plot

    @maxnoe
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  5. Fix electron spectrum

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  6. Fix docstring of lima

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  7. Electron spectrum now correct, IRF Document was relying on ROOT inter… 

    …nals
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  8. Add readthedocs config

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  9. Fix indentation in readthedocs config

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  10. Add test requirements

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  11. Add calculating sensitivity for a fixed set of cuts 

    Co-authored-by: Michele Peresano <michele.peresano@cea.fr>
Co-authored-by: Lukas Nickel <lukas.nickel@tu-dortmund.de>
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  12. Merge branch 'master' into rewrite

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  13. Add bin center, improve check

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  14. Do not give format, prevents reading root files accidentally

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  15. Add flux sensitivity

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  16. Add electrons

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  17. Add general function to apply cuts

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  18. Fix typo

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Commits on Sep 22, 2020

  1. Implement functions to calculate and apply binned cuts

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  2. Use smaller initial guess in sensitivity

    @maxnoe
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  3. Calculate number of showers from run header info 

    The hEMC contains events weighted to a spectrum of -2.5,
not the number of simulated CORSIKA showers.

We now compute this information from the guesstimated number
of runs (number of unique obs ids from the events table) and the
run header information.
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  4. Use 40% efficiency gh cut and finer binning for theta cut

    @maxnoe
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  5. Optmize gh cut

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  6. Correct reading of true azimuth for event display data

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  7. Recalculate theta cut after optimizing gh cut

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  8. Use brentq instead of newton for guaranteed convergence

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  9. Fix significance for scalar quantitities

    @maxnoe
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  10. Scale off region size by alpha=0.2

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  11. Add repr to LogParabola

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Commits on Sep 23, 2020

  1. Fix hard coded alpha=1 leftover

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  2. Add some minimum requirements for background statistics

    @maxnoe
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  3. Add calculate_theta function

    @maxnoe
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  4. Calculate Effective Area 

    Co-authored-by: Michele Peresano <michele.peresano@cea.fr>
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  5. Calculate energy dispersion 

    Co-authored-by: Michele Peresano <michele.peresano@cea.fr>
Co-authored-by: Lukas Nickel <lukas.nickel@tu-dortmund.de>
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  6. Calculate energy bias / resolution 

    Co-authored-by: Michele Peresano <michele.peresano@cea.fr>
Co-authored-by: Lukas Nickel <lukas.nickel@tu-dortmund.de>
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  7. Try running example script on travis

    @maxnoe
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  8. Add curl options

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  9. Add psf and angular resolution 

    Co-authored-by: Lukas Nickel <lukas.nickel@tu-dortmund.de>
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  10. Update notebook

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  11. Execute notebook on travis

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  12. Remove savefigs from notebook

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Commits on Sep 24, 2020

  1. Fix psf normalization

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  2. Fix test, remove unused code

    @maxnoe
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  3. Add test for psf

    @maxnoe
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  4. Update notebook and docs

    Michele Peresano committed Sep 24, 2020
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  5. Move notebook out of contribute

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  6. Build docs on travis

    @maxnoe
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  7. Remove material from first version.

    Michele Peresano committed Sep 24, 2020
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  8. Merge branch 'rewrite' of https://github.com/cta-observatory/pyirf in… 

    …to rewrite
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  9. Simplify function return values and add io for GADF format 

    * pyirf functions now return psf, aeff, edisp as simple quantities
* add functions to create the gadf hdus
* adapt plotting and tests
* adapt example

Co-authored-by: Lukas Nickel <lukas.nickel@tu-dortmund.de>
Co-authored-by: Michele Peresano <michele.peresano@cea.fr>
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  10. Start updating the docs

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  11. Install cython on travis for gammapy

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  12. Bump version to 0.2

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  13. Increase timeout for data download

    @maxnoe
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  14. Add some docstrings

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  15. Add effective area unit test

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Commits on Sep 25, 2020

  1. Fix warnings for low number of background events

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  2. Fix handling of pointing position

    @maxnoe
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  3. Start updating the docs

    @maxnoe
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  4. Fix duplicated changelog entry

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  5. Add IRF description document

    @maxnoe
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  6. Clear up install docs

    @maxnoe
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  7. Remove leftover file

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  8. Cleanup dependencies

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  9. Change usage instruction to describe library-like usage

    @maxnoe
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  10. Fix duplicated reference

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  11. Store radmax table

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  12. Add download_test_data

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  13. Use correct gadf link

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  14. Remove zip after unpacking

    @maxnoe
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  15. Fix links in introduction

    @maxnoe
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  16. Remove pdf, mention github projects

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  17. Add missing docstrings in pyirf/utils.py

    Michele Peresano committed Sep 25, 2020
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  18. Merge branch 'rewrite' of https://github.com/cta-observatory/pyirf in… 

    …to rewrite
    Michele Peresano committed Sep 25, 2020
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  19. Add __all__ magic variable

    Michele Peresano committed Sep 25, 2020
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  20. Added utils section of API documentation.

    Michele Peresano committed Sep 25, 2020
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  21. Update main index

    Michele Peresano committed Sep 25, 2020
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  22. Add docstrings and creation date to GADF HDU

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  23. More docstrings

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  24. Fix typo in main index

    Michele Peresano committed Sep 25, 2020
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  25. Remove old API section for resources

    Michele Peresano committed Sep 25, 2020
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  26. Update authors copyright

    Michele Peresano committed Sep 25, 2020
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  27. Merge branch 'rewrite' of https://github.com/cta-observatory/pyirf in… 

    …to rewrite
    Michele Peresano committed Sep 25, 2020
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  28. Fix headings in IRF index API docs

    Michele Peresano committed Sep 25, 2020
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  29. Fix creation time

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  30. Remove time arguments from sensitivity, add docstrings

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  31. Add docstrings for angular resolution and energy resolution/bias.

    Michele Peresano committed Sep 25, 2020
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  32. Fix typo in angular_resolution docstring

    Michele Peresano committed Sep 25, 2020
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  33. Add docstring to pyirf.binning.create_histogram_table

    Michele Peresano committed Sep 25, 2020
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  34. More docs

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  35. Add energy dispersion unit test

    @LukasNickel @maxnoe
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  36. Randomly generate energiey and estimate sigma from dispersion matrix

    @LukasNickel @maxnoe
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  37. Set seed in test, increase N

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  38. Improve plots in notebook

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  39. Merge pull request #41 from cta-observatory/rewrite_unit_tests 

    Add energy dispersion unit test
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Commits on Sep 26, 2020

  1. Update README.rst

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  2. fix some nomenclature in test dispersion

    Michele Peresano committed Sep 26, 2020
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  3. Global formatting compliant with PEP8 via black.

    Michele Peresano committed Sep 26, 2020
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  4. Fix bug in plot spectra example

    Michele Peresano committed Sep 26, 2020
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  5. Add examples section to docs

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  6. Calculate PSF on gammas without theta cut, update notebook

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  7. Remove mpl clutter from notebook cell output

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  8. Fix HDUDOC link for GADF

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  9. Make sure uproot is version 3 for the moment

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  10. Change author in setup to CTA ASWG

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  11. Transpose irf arrays when writing to fits to match GADF order, add te… 

    …st reading IRFs with gammapy
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  12. Add tests for benchmarks

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Commits on Sep 27, 2020

  1. Update README

    Michele Peresano committed Sep 27, 2020
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  2. Add cython to installation test extras

    Michele Peresano committed Sep 27, 2020
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  3. Remove cython, does not fix the problem with installing gammapy

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