2021-sourmash-datasette

Exploring sourmash 'gather' and 'taxonomy' output with datasette.

Quickstart

First install datasette and csvs-to-sqlite. This can be done with conda or mamba:

conda env create -n datasette -f environment.yml
conda activate datasette

Then run:

# convert sourmash gather/sourmash tax output lineages into their own cols
./make-db.sh

# run datasette!
datasette gathertax.db --static sourmash:static/ -o

Finally, go to /sourmash/index.html at your datasette site - by default, it should be at 127.0.0.1:8001/sourmash/index.html.