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  1. LatticeDNAOrigami LatticeDNAOrigami Public

    A program for running Monte Carlo simulations of a lattice model of DNA origami, especially for studying its self-assembly process.

    C++ 2

  2. origamipy origamipy Public

    Python package for analysis, visualization, and support for the LatticeDNAOrigami simulation program.

    Python

  3. ActinRingsMC.jl ActinRingsMC.jl Public

    A Julia simulation package with functions for running adaptive umbrella sampling Monte Carlo simulations of crosslinked actin rings.

    Julia

  4. bibtools bibtools Public

    A set of tools for processing a reference database composed of bib files.

    Python 1

  5. elastic-rings elastic-rings Public

    A program for solving geometrically non-linear elastic rings with the deal.II finite element method (FEM) library.

    C++

  6. BlobCrystallinOligomer BlobCrystallinOligomer Public

    Modeling tools for virtual move Monte Carlo (VMMC) simulations of oligomers consisting of very-coarse-grained representations of Alpha-B Crystallin.

    C++