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more travis-ci changes
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daler committed Jun 4, 2015
1 parent d91c6be commit d16fe86
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Showing 2 changed files with 7 additions and 2 deletions.
7 changes: 6 additions & 1 deletion .travis-test.sh
Original file line number Diff line number Diff line change
Expand Up @@ -8,10 +8,15 @@ BEDTOOLS_BRANCH=v2.24.0
./.install-tabix.sh $TABIX_VERSION ${TRAVIS_BUILD_DIR}
./.install-bedtools2.sh ${TRAVIS_BUILD_DIR} ${BEDTOOLS_BRANCH}
./.install-samtools.sh $SAMTOOLS_VERSION ${TRAVIS_BUILD_DIR}

export PATH=${TRAVIS_BUILD_DIR}/tabix-${TABIX_VERSION}:$PATH
export PATH=${TRAVIS_BUILD_DIR}/samtools-${SAMTOOLS_VERSION}:$PATH
export PATH=${TRAVIS_BUILD_DIR}/bedtools2/bin:$PATH

export PATH="$HOME/miniconda/bin:$PATH"
hash -r
source activate test-environment

echo $PATH
nosetests -v
cd docs && make clean && make doctest

2 changes: 1 addition & 1 deletion .travis.yml
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ install:
# Useful for debugging any issues with conda
- conda info -a

- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION matplotlib pandas sphinx cython pyyaml numpydoc pyyaml
- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION matplotlib pandas sphinx cython pyyaml numpydoc pyyaml nose
- source activate test-environment
- python setup.py develop

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