Merge pull request #104 from danforthcenter/nl_models #33
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
on: | |
push: | |
branches: [main, master] | |
pull_request: | |
branches: [main, master] | |
name: test-coverage | |
jobs: | |
test-coverage: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- name: Add mcstan repo | |
run: | | |
writeLines('options(repos = c(INLA = "https://mc-stan.org/r-packages/", getOption(\"repos\")))', file("~/.Rprofile", "ab")) | |
shell: Rscript {0} | |
- name: Create and populate check.Renviron file | |
run: | | |
echo R_CHECK_DONTTEST_EXAMPLES=false >> ~/check.Renviron | |
echo R_LIBS=/usr/lib/R/site-library >> ~/check.Renviron | |
shell: bash | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: any::covr | |
needs: coverage | |
- name: Test coverage | |
run: | | |
covr::codecov( | |
quiet = FALSE, | |
clean = FALSE, | |
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | |
) | |
shell: Rscript {0} | |
- name: Show testthat output | |
if: always() | |
run: | | |
## -------------------------------------------------------------------- | |
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload test results | |
if: failure() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: coverage-test-failures | |
path: ${{ runner.temp }}/package |